RNA id: TU1984047



Basic Information


Item Value
RNA id TU1984047
length 208
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1732324
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35675549 ~ 35675756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctaccgagttccaaactgcctctggaagcaacgtcagcacaagaaccgttcatcgggagcttcatgaaatgggtttccatggccgagcagctgcacacaagcctatgatcaccatacggaatgccaagcatcggctggaatggtgtaaagcatTGGTTTCTGGAGAAGTGGAAACTCGTTCTCTTgattgatgaatcacgcttcacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1984046 lncRNA upstream 44 35675191 ~ 35675505 (+) True G1732323
TU1984042 lncRNA upstream 1892 35673175 ~ 35673657 (+) True G1732319
TU1984039 lncRNA upstream 3163 35670797 ~ 35672386 (+) True G1732317
TU1984031 lncRNA upstream 9954 35665395 ~ 35665595 (+) True G1732309
TU1984030 lncRNA upstream 11596 35663554 ~ 35663953 (+) True G1732308
TU1984056 lncRNA downstream 6720 35682476 ~ 35682744 (+) True G1732333
TU1984057 lncRNA downstream 7117 35682873 ~ 35683096 (+) True G1732334
TU1984059 lncRNA downstream 8161 35683917 ~ 35684172 (+) True G1732336
TU1984062 lncRNA downstream 9801 35685557 ~ 35735257 (+) False G1732338
TU1984061 lncRNA downstream 43176 35718932 ~ 35735970 (+) False G1732338
XR_005038438.1 mRNA upstream 38411 35636587 ~ 35637138 (+) True LOC118942786
NM_001165066.2 mRNA upstream 165428 35503691 ~ 35510121 (+) False sh2d1ab
XM_021577600.2 mRNA upstream 407749 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 642133 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 744378 34917692 ~ 34931171 (+) True LOC110501070
XM_021577628.2 mRNA downstream 112735 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 112736 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 112736 35788492 ~ 35982905 (+) True LOC110500322
XM_021577629.2 mRNA downstream 324065 35999821 ~ 36039069 (+) True sepsecs
XM_021577630.2 mRNA downstream 382360 36058116 ~ 36094464 (+) True lgi2a
TU1983724 other upstream 191195 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 1806572 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2353788 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3513157 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3538853 32135955 ~ 32136696 (+) False LOC110501063
TU1984485 other downstream 365575 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 557366 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1081233 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1572871 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1695201 37370957 ~ 37371667 (+) True G1734420

Expression Profile