RNA id: TU1984895



Basic Information


Item Value
RNA id TU1984895
length 231
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1733116
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36610616 ~ 36610846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagatggcttcggcctttgtactgaactttcatccgcgcagggtggatgaggtagccggtgatgttcttctccttcagtgctttggcggcaggtctgaactgcttgcgacgtctggcgagatccgcgctcatatctgggaaaaggctgaccctctttccatcgatggtgatgtcccctttggctcttgcgagttgcagtatcttctctctgtcttggaaacggaggaacct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1984894 lncRNA upstream 119 36610294 ~ 36610497 (+) True G1733115
TU1984831 lncRNA upstream 19737 36589563 ~ 36590879 (+) True G1733056
TU1984871 lncRNA upstream 33722 36574336 ~ 36576894 (+) True G1733094
TU1984845 lncRNA upstream 60723 36534834 ~ 36549893 (+) True G1733069
TU1984472 lncRNA upstream 624346 35985967 ~ 35986270 (+) True G1732722
TU1984910 lncRNA downstream 21918 36632764 ~ 36632984 (+) True G1733131
TU1984914 lncRNA downstream 28627 36639473 ~ 36639697 (+) True G1733135
TU1984970 lncRNA downstream 146143 36756989 ~ 36760221 (+) True G1733187
TU1984989 lncRNA downstream 179388 36790234 ~ 36795077 (+) True G1733206
TU1985007 lncRNA downstream 199442 36810288 ~ 36810676 (+) True G1733224
XM_021577638.2 mRNA upstream 22576 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 22576 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 152819 36426786 ~ 36457797 (+) False LOC110500329
XM_036957719.1 mRNA upstream 161627 36426787 ~ 36448989 (+) True LOC110500329
XM_036957716.1 mRNA upstream 162931 36426782 ~ 36447685 (+) False LOC110500329
XM_036956504.1 mRNA downstream 55765 36666611 ~ 36756612 (+) True LOC110500825
XM_036957723.1 mRNA downstream 605359 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 637450 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 637451 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 637451 37248297 ~ 37311240 (+) False zgc:109889
TU1984576 other upstream 374351 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 568128 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1126262 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2741639 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 3288855 33321453 ~ 33321761 (+) True G1729465
TU1984969 other downstream 146143 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 637781 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 760111 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 954582 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 1149489 37760335 ~ 37763258 (+) False cited1

Expression Profile