RNA id: TU1984989


Basic Information

Item Value
RNA id TU1984989
length 4824
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1733206
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36790234 ~ 36795077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACACATTTAACATCCTAGTCAAAGGAACATCAGAATACATGTACATACGTTCCATAAGTGGCCTATCATTATCAAACGAGATTAAAACAGAAAAACATTTGTAAAAGGAGTGTAGGAAAGTACagtttcccaaatggcacacaaTTTTCTATTCAGCCAATAGTGGCCTGGTCAGAAGTTGcacatgtagggaatagagtgcgaTTCGGGACACAGCCTAGGAGAGAACGTGTGGTTATAGCatgtaaaaacttttttttttttaaacgatacACCTTTTGTTCTGAGAATGTGCCCTTTGGTTTTATTAcggtttctcctctctctgtttctcttatACACACAGaccaaagagagagggagagagagagattgacacaGAGAGCGCAGTATAGCTATGTAGAATAAGATCTGTCTTTATCACATTTCACACCCGTCCCTTACACGTGCAGCTGCTACACCTCTCTCTCAACACGCATGCACACCTAGAGTTCACCGAACCATATTCCCATGAAAAAAAAACAACCTGTAATTTTacaactgaactgttacaatgcACACAGTATCTTTTTCAAGGACAGGGAGAGACTTTGAAAGTAACCAACATAGTATCTGGTAGTGATTACATTTATGATTATAGTGTGTCAATTCAGGCTTTCAAAGCCATATTTacatataaaaacacacacaagacCCAAGGTGTAAATCTTCTATAAcgggtattcccaaactgggaaCGATTACCCCCCGACCCCATTTCTttcttcttcacattttcaaacagtccatttagattTTCCAACGGGGGCTATACATTTTggtgagttttttttccctcGCATGATGAGTAGCCACGtgtcactgccaaaaataaaattaaaccaccTAGTGTTCAGCGAAAACAACAATGTAAAATACAGGTAgcttagtcaaataattaacatccaattacattaactctctcgcgggaattccactaacggtggAAAAAAGtatgtagctgctgctcatgttggtatctgtactgatggtgcaaaagccatgacagggagacatagtggactggtaacgcgcgtgcaagcagttgctcccgacaccacttgggtacactgcagcatccaccaagaggctcttgtTGCCAAGGGAATGCATGACAGCTTAAAAAAATAGTTTTGGACACTAcggtgaaaatggttaactttgttaaagcaaggcccctgaactctcatgtattttctgcactatgcaatgatatgggcagcgaccatgtaacgcttttacaacatacagaagtgcgctggttatcaaggggcaaagtattgacacgtttttttaattgagagatgagcttaaagttttcctaactgaccataattttcacttgtctgaccgcttgcatgatgatgagtttctcacatgactggcctatcttggtgatgttttttctcgccaactatattcaatgtgcaggacaaaattgaggctatgattaagaagttggagctttTCTCTGTCTTTattaaggacaacacacaggactttccatcattgtatgatttttttgtgtgaacACAcgcttatggacaatgtcaaatgtgatacagCGAAGCAGCTGAGTGAATTGGGTGTGCAATTATGCAGGAACTTTCTCAAAACGGATGACagaaacaactggattcgttatccctttcatgtcctgcctccagtccacttaccgatatctgaacaaaagagcctcatcgaaattgcaacaagcggttctgtgaaaattgaatttaatcagaagccaatGAAGCCACctatttctggattgggctgcactcagagtatcctgccttttgaaatcgcgctgttaagacactgataccctttgcaaccacgtacctatgtgagagtggattccctcactagcatgaaaatgTTCTACACCTGTATTTAGTTATCTTCAATAGAACCCAatattgcagagttatgtgcatcctttcaagcacacccttctcattaacctgttgtgagttattcacaattttcaatgaacaaataagATTTTATAGGTAAAGAGCAacatgattgattattattatatgattatttgtgccctgttcctaaaaagagctctttgtcacttcccacgagccaggttgtgacaaaaactcacactcattcttatgtttaataaatgtatcacatagtgtgtgtgtggcaggcaaaaaacagtgcgctgaccctggtatgcagctggaggttgaatgtttgaaggggtacgggactataaaaagtttgggaaccgctGTTCTGTAACACACAATAATTGCATATTCACATAACCAACATGCTACAAAGTAAATAAATTGTATTTGCTGGACTGAATATGTATGTAATAGACGTACAgctccaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtatctaaGCCTATAGGTCCATGTTCATAACTGTTGTCAGATTGTGTGTTGGGAAACCTTGGGTGTGTGTTGTACTACACTGTATGAAACAGAACAACGATGATATATCAACCCAAAGAGGAACATGCTGGGGAACAATGTATCTATAACATACTCTGTCTTGTTTACGGTTGCAAAATTAGTTATTTTCCCAAATTCTCAGGTTTTCAAAAAAATACATGTTGGGGTCCTGTGTGGCACAGTTGGTAAAACATTGACGATACCAGGGTCATGGGTTTTATACCCATTTGGAGTCACTAATAGGAAAATGTACCAGGTTGacatgagtcttgtcctggaggcagaactgagtgatttCCCCTTAGGCCAGCTggaaagtcaaaattggctagaTTGTAAAAATGCATGAAAACTAAAATGAGCTTTTGTGTCTTAATTGAAGgttgtatgactttgtggctgtgccagctagtgtctgctaaatggcctaGTGTGTTAGGATTCACGGGTTTCCTGATTATTCCCTTCTAATTCTAGCAATCTTCCAACATTTTAGGAAAGTTATCGGAATTAACTTAACTGGCAGATGGCTTGGTACCGTTAGTGGGgtgtagtgttttttgggggcTCCTTACGATATTTTTGCAACTAGTAGGAGTGTCTATATGTGTGAGCGAGGGTCCAAGTGAGCAAACTtgatcaaaatattttttttttggaaGTGACAGGATTAAAACAGCAACCAAACAAATAAAGACGGCTGTCACACTTGTGAAAAAAACTAACAATTTATGGTTCACTTGgtgtctccaccctctccctcaaGTTTACACAGTATAAGAACTATACAGATGGAGACTCTTAATTTGCAGTGCAGGAAATTTCTAAATGgttgtgtatttgaggtttaaaaagacttctgaagtttgtaatttcccccACAAAAATGTCCAAGaattataatataattataataattcacatttactgttgctgcaggattatgttCCTGCTTTAGAAAactggatcaaattaagatcctacatctgtacatacaCTATAAACACAGATACAACCACAGATTCTTAGAAGAGGTGGTTAATCGTCACCCAGttttgtgtgttatgtgtgtgcgtgtgtatgtgtaagagagagagagtgtgggcgTGTGGGTTGCATGTTCTGCGGAGTCCCTATCATGTGTATGTCTACGCATTTGAATGTGTTGCGTGTTCTGCAGAGTCCCtcttgtgtgactgtgtgtttttcTGCATGTGTCTCGTGTTCCGCGGCGTCCCTCTcatgtgtctgactgtgtgtgtgggtgtattccGTGTTCctctttgagagagagaaagtgtttgtgtgtgttgcatgtTTCTCTGCAAAACAAAGAATACAAAGCTGGCAGGCGCGCCCCCAAACAAAccctactgtatgtttgtttaaccTTTCCTCCGAGACAACCACGGAGCCAATGAAcactgaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcctccgctTGTGCACTGACAATTACCAGACGACAAAGGgaggcgttgtgtgtgtgtgtctcagagagagaaGTGAAGTGTGTCTGTATGGCAGGGAGCCATGATGTACTGTGTATGGTTTGTGTTTAGATTAAAGTGTTTGTTTACTTTCTGCCAATTGTTGCTGACTGGCATGGGCTTAAAGAAggtctgacagtgtgtgtgtgtgtatgtgtttcccGGCATCAGTATGCTGTTCCACAGGTTACACTGGACAGACAGGTGGAGACCAGAGAGattccagagagagagattccagagagagagataagagagatttcagagagagagagagtaagagagaaagaaagagatagcaAGAGAGACAAAGTTTACTTAAGAGACTGGTAGGGCCGTATacccctctttcactctctctgtcctttctttGTACTGTCTGTTCCATTCCTCTGCCCGTTCcttatcctcctcttcttctcctttatTCAATCCATAACTGTGTTCAACAGTGTCCAATGTcgtttaaacaacaacaaaacagagtCCTCTTCCAAACTGTCTTACATCCAAAGTTTAAAAGTCCTCAACAATGCAGCGAGCAAAAGTAATCcactcttcttctttctctaAATGGTCTTGTATATAACATATTAGTATTTGTTCTAATTTCCCAAACCGCCGAATGTCCAGTTAGAACCTTTGGAACAGACAGTCAACTTCACAGAAATAGAATGATTAGAATATaactcattctagttctgtgctCAACTCCTTTCTATACAGTCAGTatgtaatgtacagtgccttgcgaaagtattcggcaaactttaaacaacacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984970 lncRNA upstream 30013 36756989 ~ 36760221 (+) True G1733187
TU1984914 lncRNA upstream 150537 36639473 ~ 36639697 (+) True G1733135
TU1984910 lncRNA upstream 157250 36632764 ~ 36632984 (+) True G1733131
TU1984895 lncRNA upstream 179388 36610616 ~ 36610846 (+) True G1733116
TU1984894 lncRNA upstream 179737 36610294 ~ 36610497 (+) True G1733115
TU1985007 lncRNA downstream 15211 36810288 ~ 36810676 (+) True G1733224
TU1985011 lncRNA downstream 20249 36815326 ~ 36815577 (+) True G1733228
TU1985044 lncRNA downstream 68352 36863429 ~ 36864198 (+) True G1733257
TU1985045 lncRNA downstream 69315 36864392 ~ 36864607 (+) True G1733258
TU1985054 lncRNA downstream 84143 36879220 ~ 36879673 (+) True G1733267
XM_036956504.1 mRNA upstream 33622 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 202194 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 202194 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 332437 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 421128 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 453219 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 453220 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 453220 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 453221 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 31351 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 553969 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 747746 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1305880 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2921257 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 453550 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 575880 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 770351 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 965258 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 1248014 38043091 ~ 38045066 (+) False G1734960

Expression Profile