RNA id: TU1985045


Basic Information

Item Value
RNA id TU1985045
length 216
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1733258
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36864392 ~ 36864607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaactctgtgtcgttgtatgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgccaacctggttaaataaaggtgaaataaaataaaataaaataaaaaggggagagaagacagaagggagtgagagcagagagaggagaaggaagaggtgaTAAATAGGTTAGGAAAGAGGGTAGAGGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1985044 lncRNA upstream 194 36863429 ~ 36864198 (+) True G1733257
TU1985011 lncRNA upstream 48815 36815326 ~ 36815577 (+) True G1733228
TU1985007 lncRNA upstream 53716 36810288 ~ 36810676 (+) True G1733224
TU1984989 lncRNA upstream 69315 36790234 ~ 36795077 (+) True G1733206
TU1984970 lncRNA upstream 104171 36756989 ~ 36760221 (+) True G1733187
TU1985054 lncRNA downstream 14613 36879220 ~ 36879673 (+) True G1733267
TU1985056 lncRNA downstream 17446 36882053 ~ 36882346 (+) True G1733269
TU1985746 lncRNA downstream 55363 36919970 ~ 36920363 (+) True G1733876
TU1986070 lncRNA downstream 309465 37174072 ~ 37174391 (+) True G1734192
TU1986075 lncRNA downstream 314169 37178776 ~ 37179061 (+) True G1734197
XM_036956504.1 mRNA upstream 107780 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 276352 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 276352 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 406595 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 351598 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 383689 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 383690 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 383690 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 383691 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 105509 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 628127 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 821904 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1380038 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2995415 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 384020 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 506350 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 700821 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 895728 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 1178484 38043091 ~ 38045066 (+) False G1734960

Expression Profile