RNA id: TU1985056


Basic Information

Item Value
RNA id TU1985056
length 294
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1733269
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36882053 ~ 36882346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtagaatacacaatgtGCAATTTGGAAATTTggtagtgcatcagcagttttcctctttTTACtgtatgtcagtcactgacagtcactcaattagcccatgtcagcactTTATAGATTGCtaggtaaattagtctagccagcaatCTAAACCTTCTAGTAATCATGGCTGAATTACTGACCAGACACACAAGGCATGTGCCCAGGGACCCTGACCTctagggggcccccattgattttgttagtcactctcactgtGACATCATATGAACATGGCATGCACAATAAATataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1985054 lncRNA upstream 2380 36879220 ~ 36879673 (+) True G1733267
TU1985045 lncRNA upstream 17446 36864392 ~ 36864607 (+) True G1733258
TU1985044 lncRNA upstream 17855 36863429 ~ 36864198 (+) True G1733257
TU1985011 lncRNA upstream 66476 36815326 ~ 36815577 (+) True G1733228
TU1985007 lncRNA upstream 71377 36810288 ~ 36810676 (+) True G1733224
TU1985746 lncRNA downstream 37624 36919970 ~ 36920363 (+) True G1733876
TU1986070 lncRNA downstream 291726 37174072 ~ 37174391 (+) True G1734192
TU1986075 lncRNA downstream 296430 37178776 ~ 37179061 (+) True G1734197
TU1986079 lncRNA downstream 297555 37179901 ~ 37180117 (+) True G1734201
TU1986083 lncRNA downstream 300059 37182405 ~ 37182622 (+) True G1734205
XM_036956504.1 mRNA upstream 125441 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 294013 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 294013 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 424256 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 333859 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 365950 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 365951 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 365951 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 365952 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 123170 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 645788 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 839565 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1397699 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3013076 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 366281 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 488611 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 683082 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 877989 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 1160745 38043091 ~ 38045066 (+) False G1734960

Expression Profile