RNA id: TU1986070


Basic Information

Item Value
RNA id TU1986070
length 320
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1734192
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37174072 ~ 37174391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGATGTCTGGCCAATATGAGTACTTGGTTATGCTCTTTGGCTTAGCCAATGCTCCGTCAGTGTTCCAGGCATTCGTCAACGAGGTGTTCAGTGACATGCTTGGATGTCAGGTGAGTGTATACATCGATGACATCAGTCAGAGGGGAGGTACTGTAACATCTGCTCCTCCCCTACGGCGTGCAACGTCACAGGAATACTATCCACtggtcctgggattcatcattatgcacacctgttaatcattgtgattcacacctggacttcattaccTTCATAATTTCTTCCCCTCACTCTCTATTGTTCACTTACCAGTTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1985746 lncRNA upstream 253709 36919970 ~ 36920363 (+) True G1733876
TU1985056 lncRNA upstream 291726 36882053 ~ 36882346 (+) True G1733269
TU1985054 lncRNA upstream 294399 36879220 ~ 36879673 (+) True G1733267
TU1985045 lncRNA upstream 309465 36864392 ~ 36864607 (+) True G1733258
TU1985044 lncRNA upstream 309874 36863429 ~ 36864198 (+) True G1733257
TU1986075 lncRNA downstream 4385 37178776 ~ 37179061 (+) True G1734197
TU1986079 lncRNA downstream 5510 37179901 ~ 37180117 (+) True G1734201
TU1986083 lncRNA downstream 8014 37182405 ~ 37182622 (+) True G1734205
TU1986105 lncRNA downstream 22222 37196613 ~ 37196945 (+) True G1734227
TU1986110 lncRNA downstream 25795 37200186 ~ 37200425 (+) True G1734232
XM_036956504.1 mRNA upstream 417460 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 586032 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 586032 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 716275 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 41814 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 73905 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 73906 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 73906 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 73907 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 415189 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 937807 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1131584 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1689718 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3305095 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 74236 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 196566 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 391037 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 585944 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 868700 38043091 ~ 38045066 (+) False G1734960

Expression Profile