RNA id: TU1986083


Basic Information

Item Value
RNA id TU1986083
length 218
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1734205
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37182405 ~ 37182622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttccaatgtttgtctatggagattgcatggctgcgtgctcgattttatgcacctgtcagcaacgggtgtagctgaaatagccaaatccactaatttaaaggggtgtcatctacttttgaccatgtagtGTAGCTGGCCCGTTTCTACTGGTGAGATGAATAAACTCTCGTATTTCCATGTAGTGAGGTAATTCTAAATGTTTATGACAGATGTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986079 lncRNA upstream 2288 37179901 ~ 37180117 (+) True G1734201
TU1986075 lncRNA upstream 3344 37178776 ~ 37179061 (+) True G1734197
TU1986070 lncRNA upstream 8014 37174072 ~ 37174391 (+) True G1734192
TU1985746 lncRNA upstream 262042 36919970 ~ 36920363 (+) True G1733876
TU1985056 lncRNA upstream 300059 36882053 ~ 36882346 (+) True G1733269
TU1986105 lncRNA downstream 13991 37196613 ~ 37196945 (+) True G1734227
TU1986110 lncRNA downstream 17564 37200186 ~ 37200425 (+) True G1734232
TU1986112 lncRNA downstream 58734 37241356 ~ 37242879 (+) True htr2cl1
TU1986142 lncRNA downstream 126151 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA downstream 126151 37308773 ~ 37314293 (+) True zgc:109889
XM_036956504.1 mRNA upstream 425793 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 594365 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 594365 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 724608 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 33583 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 65674 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 65675 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 65675 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 65676 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 423522 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 946140 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1139917 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1698051 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3313428 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 66005 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 188335 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 382806 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 577713 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 860469 38043091 ~ 38045066 (+) False G1734960

Expression Profile