RNA id: TU1986105


Basic Information

Item Value
RNA id TU1986105
length 333
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1734227
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37196613 ~ 37196945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaaagactctcagaacatgagataaaagattctctggtctgatgaaaccaagattgaactatttggcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctatggtgaagcatagtggtggcagcatcatgttgtttgaatgtttttcagaggcagggactgggagactagtcaagattgaggcaaagatgaacggcgcaaagtacagagagatccttgattaaaaccttcTCAAGAGTGCTCTGGACCTCTACTGgcgcgaaggttcaccttccaacaggccaatgaccctaagctcacagccaaagacaacgcaggag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986083 lncRNA upstream 13991 37182405 ~ 37182622 (+) True G1734205
TU1986079 lncRNA upstream 16496 37179901 ~ 37180117 (+) True G1734201
TU1986075 lncRNA upstream 17552 37178776 ~ 37179061 (+) True G1734197
TU1986070 lncRNA upstream 22222 37174072 ~ 37174391 (+) True G1734192
TU1985746 lncRNA upstream 276250 36919970 ~ 36920363 (+) True G1733876
TU1986110 lncRNA downstream 3241 37200186 ~ 37200425 (+) True G1734232
TU1986112 lncRNA downstream 44411 37241356 ~ 37242879 (+) True htr2cl1
TU1986142 lncRNA downstream 111828 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA downstream 111828 37308773 ~ 37314293 (+) True zgc:109889
TU1986303 lncRNA downstream 161232 37358177 ~ 37358655 (+) True G1734411
XM_036956504.1 mRNA upstream 440001 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 608573 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 608573 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 738816 36426786 ~ 36457797 (+) False LOC110500329
XM_036957723.1 mRNA downstream 19260 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 51351 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 51352 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 51352 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 51353 37248298 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 437730 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 960348 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1154125 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1712259 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3327636 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 51682 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 174012 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 368483 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 563390 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 846146 38043091 ~ 38045066 (+) False G1734960

Expression Profile