RNA id: TCONS_00051038


Basic Information

Item Value
RNA id TCONS_00051038
length 777
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_026121
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9542168 ~ 9571309 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgccagggccgattttttgccccagtccaacattttgttttttgtttttacatccaTGCTCTCTTTCTCTTGTAGCAGAGCGGTATGAAGTGTTGGGATCTGCAGGTCCTGTATTTGCATTTGCTGGTGAAGATGTGACTCTGCCCTGTTCAGTCAAACCCAACATCAGTGTTGTGGACATGAGAGTCGAGTGGTTTAGACTTGATCAGAAATACTCAGTAGTTCATCTCTATGAGGATCATGAAGACAGAAACACAGAGCAGATTCAGTCCTACAGAGGGAGAACTGAACTCAATCATCAACAACTACAAACAGGAAACGCATCACTCAGACTATCAGCAGTGAAAGTGTCTGATGAAGGACGCTATAAGTGTTTTATTCAGTCCAACTCAGTGTCTGATGATGCCACGATTAATTTTAAAGTTGAAgCTGTAGGAAGTCCTCCAATGATCACAGTAGATGGATTTGATCATTTAGGAGGGCTTCGTCTACAGTGTGAATCTGAAGGTTGGCATCCTGAACCTGATCTTGAGTGGCTGGACAGTGAAGGAGTCAGACTGAGTTCAGAAACTACAGagaaacacagaaacacagacagaTTCAGTGTGAAACACACCGTCACTGTTCATCAGAGAAACAGCAAGATTCACTGCAGAGTCAAAGTGAGACACCACATGCTGGAGACACTGATCAGCTCTACAAAACACAAGAAACTACAGCTTGATAACTGCAGAATGCAAAGTGGTGAGTTTGTCTTACCTAAAAGGGATAGATAa

Function

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-57 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including BTNL3 (butyrophilin like 3); BTNL8 (butyrophilin like 8); and BTN1A1 (butyrophilin subfamily 1 member A1).

Ensembl:

ensembl_id ENSDART00000057352

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051033 lncRNA downstream 87482 9475575 ~ 9476755 (-) True XLOC_026118
TCONS_00052434 lncRNA downstream 641441 8921127 ~ 8922796 (-) True XLOC_026112
TCONS_00052941 lncRNA downstream 836356 8719386 ~ 8727881 (-) True XLOC_026109
TCONS_00052940 lncRNA downstream 836406 8719386 ~ 8727831 (-) False XLOC_026109
TCONS_00052939 lncRNA downstream 1001468 8561385 ~ 8562769 (-) True XLOC_026108
TCONS_00052942 lncRNA upstream 152507 9723816 ~ 9727798 (-) False XLOC_026123
TCONS_00052943 lncRNA upstream 153457 9724766 ~ 9727824 (-) True XLOC_026123
TCONS_00051041 lncRNA upstream 173146 9744455 ~ 9752851 (-) True XLOC_026125
TCONS_00051042 lncRNA upstream 182705 9754014 ~ 9761538 (-) True XLOC_026126
TCONS_00052435 lncRNA upstream 324907 9896216 ~ 9899429 (-) True XLOC_026127
TCONS_00051035 mRNA downstream 67384 9496077 ~ 9496853 (-) True XLOC_026120
TCONS_00051034 mRNA downstream 75887 9485208 ~ 9488350 (-) True XLOC_026119
TCONS_00051032 mRNA downstream 105792 9457762 ~ 9458445 (-) True XLOC_026117
TCONS_00051031 mRNA downstream 119488 9431501 ~ 9444749 (-) True XLOC_026116
TCONS_00051027 mRNA downstream 690521 8873204 ~ 8873716 (-) True XLOC_026111
TCONS_00051039 mRNA upstream 63468 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051040 mRNA upstream 166181 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051048 mRNA upstream 738781 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051049 mRNA upstream 836149 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051050 mRNA upstream 964648 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051030 other downstream 532470 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051029 other downstream 539685 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051028 other downstream 629761 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00050944 other downstream 3336091 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00050943 other downstream 3336256 6221205 ~ 6227981 (-) False XLOC_026049
TCONS_00051043 other upstream 342963 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051045 other upstream 607882 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 615724 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051047 other upstream 641789 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051051 other upstream 965165 10536474 ~ 10548477 (-) False XLOC_026140

Expression Profile

//