RNA id: TU1986313


Basic Information

Item Value
RNA id TU1986313
length 711
RNA type TUCP
GC content 0.45
exon number 1
gene id G1734420
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37370957 ~ 37371667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgtctgtctgtctttatgtctctgtctgcctctggctgtctgtgtgtatgtgtgagtgtctgtctgtctgtctgtgtgtatgtgtctgtctgtctgtctgtctctctgaggctgtctgtctgtctgtctgtctttatgtctctgtctgtctctctctgtctgtgtttttctgtctgtttttttctctctctgtctgtctgtctgtctgtctgtctgtctgtatgtctgtctgtctgtctgtgtctgtttttctgtctgtcttcatgtctctgtctgtctctctctgtctgtgtttttctgtctgtgtttttctctctctgtctgtctctctgtctatctctgtctgcctctggctgtctgtgtgtttgtctgtctgtctgtctgtctctctgagtctgtctgtctgtctgtctgtctttatgtccctgtctgtctctctctgtctgtgtttttctgtctgtgtttttctttctctgtctgtctctctgtctatctctgtctgcctctggctgtctgtgtgtttgtctgtctgtctgtctgtctgtctctctgagtctgtctgtctgtctgtctttatttccctgtctgtctctctctgtctgtgtttttctgtctgtgtttttctttctctgtctgtctgtctgtctgtctgtctttatgtctctgtctgtctctctctgtctgtgtttttctgtctgtctgtctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986303 lncRNA upstream 12302 37358177 ~ 37358655 (+) True G1734411
TU1986142 lncRNA upstream 56664 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA upstream 56664 37308773 ~ 37314293 (+) True zgc:109889
TU1986112 lncRNA upstream 128078 37241356 ~ 37242879 (+) True htr2cl1
TU1986110 lncRNA upstream 170532 37200186 ~ 37200425 (+) True G1734232
TU1986320 lncRNA downstream 4962 37376629 ~ 37376859 (+) True G1734424
TU1986321 lncRNA downstream 5290 37376957 ~ 37377281 (+) True G1734425
TU1986323 lncRNA downstream 20838 37392505 ~ 37392720 (+) True G1734427
TU1986331 lncRNA downstream 34902 37406569 ~ 37406822 (+) True G1734435
TU1986357 lncRNA downstream 88888 37460555 ~ 37461176 (+) True G1734461
XM_036957729.1 mRNA upstream 59717 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA upstream 59717 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA upstream 59717 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA upstream 59717 37248298 ~ 37311240 (+) False zgc:109889
XM_036957726.1 mRNA upstream 59717 37248300 ~ 37311240 (+) False zgc:109889
XM_036957730.1 mRNA downstream 59129 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA downstream 59150 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA downstream 59517 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA downstream 112964 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_021577614.2 mRNA downstream 277835 37649502 ~ 37656152 (+) False LOC110500311
TU1986149 other upstream 118782 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 612074 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1134692 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1328469 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1886603 35439289 ~ 35484354 (+) True G1732028
TU1986376 other downstream 193761 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 388668 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 671424 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 673441 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 705884 38077551 ~ 38082274 (+) True LOC110500301

Expression Profile