RNA id: TU1986321



Basic Information


Item Value
RNA id TU1986321
length 325
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1734425
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37376957 ~ 37377281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtccgtatgtctctgtctctgtctgtctgtccgtgtgtatctggctctgtctgtctgtctctgtctctctctgtctgtctgtctgtttgtttgtctgtctctgtctgtctgtctgtctctgtctctctctctgtctgtctgtctgtctctctgtctctgtctgtcgctctctgtctgtctgtcgctctttgtctgtttgtctgtctgtctgtctgtctttctgtctgtctgtctgtctgtctgactttatgtctctgtctgtctctctctgtctgtgtttttctgtctgtgtttttctctctctgtctgtctctctgtctgcctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1986320 lncRNA upstream 98 37376629 ~ 37376859 (+) True G1734424
TU1986303 lncRNA upstream 18302 37358177 ~ 37358655 (+) True G1734411
TU1986142 lncRNA upstream 62664 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA upstream 62664 37308773 ~ 37314293 (+) True zgc:109889
TU1986112 lncRNA upstream 134078 37241356 ~ 37242879 (+) True htr2cl1
TU1986323 lncRNA downstream 15224 37392505 ~ 37392720 (+) True G1734427
TU1986331 lncRNA downstream 29288 37406569 ~ 37406822 (+) True G1734435
TU1986357 lncRNA downstream 83274 37460555 ~ 37461176 (+) True G1734461
TU1986373 lncRNA downstream 167868 37545149 ~ 37550449 (+) False G1734477
TU1986374 lncRNA downstream 167868 37545149 ~ 37550449 (+) True G1734477
XM_036957729.1 mRNA upstream 65717 37248296 ~ 37311240 (+) False zgc:109889
XM_036957730.1 mRNA downstream 53515 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA downstream 53536 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA downstream 53903 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA downstream 107350 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_021577614.2 mRNA downstream 272221 37649502 ~ 37656152 (+) False LOC110500311
TU1986313 other upstream 5290 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 124782 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 618074 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1140692 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1334469 36041331 ~ 36042488 (+) True G1732735
TU1986376 other downstream 188147 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 383054 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 665810 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 667827 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 700270 38077551 ~ 38082274 (+) True LOC110500301

Expression Profile