RNA id: TU1986357



Basic Information


Item Value
RNA id TU1986357
length 444
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1734461
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37460555 ~ 37461176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCtctttcttcatccctctctcttttcctggcAGTCCGCATCTCTAAGTCTGTCAATGTGAGTGTACAGGCCTGCTGTGTTACAAGCTGTTGGCTGCCAgtttcacacaaacacacgcactcacacacacacacacacacacacacacacacacacacacacacacacacacgcactcaaacacacacacacacatacacacacacaaacacgcaaacacacgcactcacacacactcacacacaaacacacgcacacacacacacacatgcacacacgcactcacacgcattcacacacacacgcactcaaacacacacacacacatacacacacacaaacacgcaaacacacgcacacacactcacacacacgcactcacacacacacacgtgtgttcacacacgcacacgcagtcacacgcactcacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1986331 lncRNA upstream 53733 37406569 ~ 37406822 (+) True G1734435
TU1986323 lncRNA upstream 67835 37392505 ~ 37392720 (+) True G1734427
TU1986321 lncRNA upstream 83274 37376957 ~ 37377281 (+) True G1734425
TU1986320 lncRNA upstream 83696 37376629 ~ 37376859 (+) True G1734424
TU1986303 lncRNA upstream 101900 37358177 ~ 37358655 (+) True G1734411
TU1986373 lncRNA downstream 83973 37545149 ~ 37550449 (+) False G1734477
TU1986374 lncRNA downstream 83973 37545149 ~ 37550449 (+) True G1734477
TU1986375 lncRNA downstream 90941 37552117 ~ 37553314 (+) True G1734478
TU1986447 lncRNA downstream 153402 37614578 ~ 37614813 (+) True G1734548
TU1986449 lncRNA downstream 158771 37619947 ~ 37620381 (+) True G1734550
XM_036957729.1 mRNA upstream 149315 37248296 ~ 37311240 (+) False zgc:109889
XM_036957733.1 mRNA downstream 23455 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_021577614.2 mRNA downstream 188326 37649502 ~ 37656152 (+) False LOC110500311
XR_002470081.2 mRNA downstream 240265 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 259942 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 297583 37758759 ~ 37765562 (+) False cited1
TU1986313 other upstream 88888 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 208380 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 701672 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1224290 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1418067 36041331 ~ 36042488 (+) True G1732735
TU1986376 other downstream 104252 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 299159 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 581915 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 583932 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 616375 38077551 ~ 38082274 (+) True LOC110500301

Expression Profile