RNA id: TU1986374


Basic Information

Item Value
RNA id TU1986374
length 4998
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G1734477
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37545149 ~ 37550449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAAATGACTTTATTTCTTCCAAAAAAAGATAATCAAAATAAAACACAGTAAGTAAAATAAAAGCCAATGATTTTTGGATTTCTGTAACGTTCGTTTTGTATTATTTCCATGCTTAATAAAATCCTAATATTTCtgcagaaataaataaaaatgtacaaagAGGGggaagaacaagaagaagaatCAGAGACAAAGGTGTGATTCTCTGAATCCTTTGGCATCCTTGACAATCAATGACATCCATTGGCAACCTGTAGATATGCAGCCAATCCCCTTCTTCATACGTTTAATCACCCCTTGGGTAttattatatatctatatactgtataatgcaAATATCAAATAGCTCTCATGTtcagaaaaataataatacaaagacAAAAATAACATTATGGCtgatgtgtgtgtatggatgtgtcccaaatgacaccatggctgcgtttacacaggcagccaaattcAAATCATTTCTCTTTGACCAGTCAGATCAGCTCTTTtaccaataattgggcaaaagatcagaattgagcTGCCCTTGTAAACGCAGcccatattccctgtatagtacaatACAGGGATTGtgatgtatatgtgtgtatgtgtttgcatgTTTCTATTTACATAGTTATCACCAGTTCAGCTATCAGAAGGGTAGTTTCCAAAAAAAACATGTAGGGAAAAAATGTGCACATGATCATTGAACAAACACTGACTGAAAATGAGCAAATGTATCAGTTTATAACGGATAAACTGATAAATTTTATGGAGAGATTTATCCGTTTATAACCCCAAAAAGCCATTCCTCTTTTTCCCTGTTCCTTTTTCATTTCAGGTTGATGACATCTTCAattactgtgttactacaggaactcgCCACTAGAGGGTGCTACACTTGCAGATATGATCTTTCAATAAAGGGAAAAAGTAACGTGGCATCTTTGGAAAAGTAAAAGGGTTTGGCTACACCCCCAGACCACCTCCTCCAATGCGTTGAGGACAGAGGACGCAATGAGCCAAGGAAAGACTATTGAGATTCACCCTAGAGCTATGGTTAGGGGTGTCTGTCCTTGCGGCATGTAATCAGAAATGCAACCATGACAATCCGGAACCCGGAGTTTTAACAGACAGTAAATCAGATCATGCTTTTAAGGGGAGCTGTAGAAAGAACACATCACGACCATGCACAGGGGAAGAAAAGCCTACCATAAAACAGACCAACAGCGTGATTTGACATTGTTGGCATTCGCTCTGGGAGCTAACGCTCTTCAGGTCTTAGAAGACGAGAGAAAAAGACAAGATTGAGACGCACCCCCTAAGATTATAACAGGACAATCAACATTGTAGTctccacactgtctctctccccctctgctatTCTTCCACTATTTTGAAACCAGTTCAAAGACACAAAACACAGGCAGGCCGGGTACCATGCAGAACAACAATCTAGTTTAAAAATGACTCAAAAAGAGAGAAATGAAACTACTGAAGAACCAGAGAACATAAGACATGATAAATTCCAGAGAAAAAGCTGTGCTCATCAACTTCAGTGCCAAACAAGGATTGTGTGCCAAATGGCATTATTCcccatatagtacactacttttgaccagaggcctacatagggaatagggtgccattgggataCAAATACAGTtgtccctagacactgatctaaggtcagttttgcatttctccCCCAAGGGTTTGCAGATCCTAGATCGGTCTCAGAGCAACTTCTACCCAGAGCTTCCTACCCTCCTGAGTAAGGGACTATCACAGTATGAGGAGCCCAGAGAAGGGTTTCTGTGTTTAATATATATCCACATAGTAAGGTTGGAATAATAGTGTGATATTGTGAAAatgataatgccattttagtgtTAGAGATGTTTGAAAAGACAGtcaaatttcagcctgttttggtgggatggcgtTTTGGCTTGCTTGGTGAcgtcaccaggcggtaaatttaatagaccaataagagcgTTCCAAACCTACAGCTAGcattcccctccccactcagaccactccctgACAATCTTAAcacaattcttgcttgagaaactgatatctttgcttatttttgaccattttaattgaaaacaatcaaaaAGGTAGTAATTGTTACCTAGAAAGGATTTGAAATAGAGatgaaaacagctgcattggacctttaacttcCAAACGACCACCACTGGTTCTCAACCCCCGTTTACACAGGTACTACTATCGCGAGGCAATCCTTCCTACAGACAAAGACTAGTGCCACCAGAACCCTCAAATACTTAAAGACTACAGACTTAATTCCTCATTGAGAGTATACATCCCCCTTGGCCATTGTGGATAGTTTGGTTTCACCGACAAGACATAAAATGCATATGATCCAATCAGAGACAGTTTAAGTTTAAAGATGGCGTACACGCCCACTCACAGCATGATTAAGTGAAGGCCTATGACAGAGTCCAGTGAAGAAACAGGAAGTTATAAGAAAAAGGGGATTGTAATGTATCATCTACAAAAGCAGAAGCAAGAAGAATCTAGAGCTATACATACTGGACAGTGAAGACTCCAATAGGAGATTCTATCTAAATATAGTTATACTAGACAATGAAACGAGGTCAGAAGGGGAATGAATCTAAAGTGATCCTGGAGACAATTCTTTAAATATAGACCAGGGcggtcaaactcattccatggagggccgagtgtctgctggtttttgtttttttctcctttcaattaagacctagacaaccaggtgaggggagttactAATTCGTGACTTTAAAacaagtacaagggtggagcgaaTGAGTTTGACACAAACTTGACAGAAAAGAAAAACCAGGAGAAGATAAAGCTATACATGCTAGACACAGTGACAAAGAGGCTAAGAGGGGAAATTAGAGCTAGGTCTACTAGACAGTGACGATCCACCAAGATAATCTTGAAGACAATGGCAATTGGCAAGTCACCAAGAGGTGAATATAGAGCTATGCACACTAGACCAAAGAGCAGCAAAGATGCTAAGATAGTGTTCTAGAGCGCTAGGTCTACTAGAAAGTGAAAAGGATCAGTCAGACGCTCCACAGTACTCAACTCACTGGTGATGTGGACCGAGACAAGGGGAAGGGTTCGTCTTAGGGATCTGCATGTGCATTCAAAACACAAGCACTCCGCTgcacctgcaaatctgtgtacgtgagcaatacactttgatttgatccATTCATTTATCACCAACTCTCCTTTCTTTCAGGTTCTGAATGTGGTCATACCAGTGAAACATTTCAGCTTGTTCATCAAaatataatgatatatatatatatatataacataacTAGGGGGCATAACTCACTATTGGCTTCAGCGTCAAGATATAGGAAGTAAACAGAAAACAGTCCTCAATGAGAAACGCATGGCATATATTACAAACCAATGTGTGTTATTACAGGGGAATTAGACAGCAAAAAGTATGGCAACTGTGACCCTATACCTGTTTTGACCTTTGGCACCAACAGTTCAGTTACATTGACATCTTTTATAAAGCCTATGGGACCAAGAGTATGCTAAAACCAGTATTGTCCATTTCAACTCCATGTCCCCCAAATATTTAACAATAAAGTAACCCTTGGCAATTAAGTTTCATTCAGCGCTAACCAGTACCAAACTTATTGGCACATATATTTGttcaaaataaaaacatgaaaCAGTTCTGTTGAGTCATCAACAGTTTGACAATATCCTTCCTTTGACACAAAAAGTTACTTTGACATCCTTTCATTTGACCCATCTTGACAGTTGGGAAGAAAATGACTGCATATGGCTTTAGCAACAATAGGACACCATcgagagcaatggacattatgaGAGAGGAAACACAAATTGTGACATCAACTGTCAGAATGATCCAATTCTGAAATCAAACATTGTTTCCGCaggatggaggtgtgtgtgtgtgtgtgtgagtaacaTGCTTTGTGTGTGTAATTTAGTGTGCGTGCGAATCCGTCAACATTTAAGGACACACTGAGGATGAAGAAGAAACTGTTTTTACAAGAGACACAAATAGACATAAGAAGAGGTTGAGGGTTAGGCTGGTGGTAGGATGGTGGTTGTGAGGATGAGTGTAGAGGGCTATCCTTAATGTTTATACTCAGTCTGATTGCATGTGGTAAAGGCTTCTCCGTGTCTGAAACAGCTCCCTTGGGTAACATACATAAGTGCTTTTCTTCGCTACCTAACAGTCAAGGATGGCAAGCGAGCAGGGACAAACGGTACTGTGTGACTTTGGTTCCACCGGTTTGATCGATATCAGTAACGGTGAGAAAGTTGGGAGAATTAAAATAAAGATTTCTAGAAACCGCTCCAATTAGTGACCTGTCGCCTAAGAAAGGTAGAGACCAGCTCACAAAGAAATGGTTTATTAACAGCTTGCGCGCAAACACACGTGCTTCGAGATAGAGAAACTGAagtcccagtaacagggCCTAGGCTACCCATGTACACCAACGACCAGAGAACGTAACAGAAGACAAACTAACCCAACAAAGAAACTTCATAATGTATACACTGGTCCTAAGTGCAATAAACTTaggacctctaacccctgaccccatcGACTGAAAACGACCTACACATTCAAGTTTTAGGTAGTTTTAAACCCAGTAATGGGCTTTgggtgtttatttttttaatatacacTATTTATAATTTTTTTCAGGAGGGGGGCTGTTTCAGACAGAGATGTGCCTTTATTATGACATATCCCCTCCGTGCTCTAGCCTTCCACCCTCCCGGGTTGATCCTCCctttctttttcttctctcttcctctcatatTTGGTGTTGGTTGGTTTTCCTTCTGTCTGTCCTTTCGTCTGTCTGTCATTCCttcgttcattcattcattcgttCATTTAGTCTTCGGTGGTTCGCTCGGCGTGTGTTTTTGCCATCACTTTCGGCACTCTGCTCCCCCCATGAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986357 lncRNA upstream 83973 37460555 ~ 37461176 (+) True G1734461
TU1986331 lncRNA upstream 138327 37406569 ~ 37406822 (+) True G1734435
TU1986323 lncRNA upstream 152429 37392505 ~ 37392720 (+) True G1734427
TU1986321 lncRNA upstream 167868 37376957 ~ 37377281 (+) True G1734425
TU1986320 lncRNA upstream 168290 37376629 ~ 37376859 (+) True G1734424
TU1986375 lncRNA downstream 1668 37552117 ~ 37553314 (+) True G1734478
TU1986447 lncRNA downstream 64129 37614578 ~ 37614813 (+) True G1734548
TU1986449 lncRNA downstream 69498 37619947 ~ 37620381 (+) True G1734550
TU1986462 lncRNA downstream 101931 37652380 ~ 37656769 (+) True LOC110500311
TU1986464 lncRNA downstream 106496 37656945 ~ 37657310 (+) True G1734553
XM_036957730.1 mRNA upstream 7325 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA upstream 7325 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA upstream 7325 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA upstream 7325 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_036957726.1 mRNA upstream 233909 37248300 ~ 37311240 (+) False zgc:109889
XM_021577614.2 mRNA downstream 99053 37649502 ~ 37656152 (+) False LOC110500311
XR_002470081.2 mRNA downstream 150992 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 170669 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 208310 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 216205 37766654 ~ 37772954 (+) True rs4x
TU1986313 other upstream 173482 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 292974 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 786266 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1308884 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1502661 36041331 ~ 36042488 (+) True G1732735
TU1986376 other downstream 14979 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 209886 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 492642 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 494659 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 527102 38077551 ~ 38082274 (+) True LOC110500301

Expression Profile