RNA id: TU1986376


Basic Information

Item Value
RNA id TU1986376
length 2764
RNA type TUCP
GC content 0.45
exon number 2
gene id G1734479
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37565428 ~ 37568953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCACAACTGTTAGGGGATCATATGTTCATTGATTTTGTCATAATTTCAcaagctcagtaaatttggttgAGAATCTTTAACAGACAGCAATCTtaaaacggtgtgtgtgtgtgtgtgtgtgtgtgcgatgtcTATCTTTATGTGTGTGGGTAAGATGAcgtaatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgttcacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatagacaacaggtggaaaatataggcaattagcaagacacccccaataaaggagtggttctgcaggtggtgactgcagaccacttctcagttcctatgcttcctggctgatgttttggttacttttgaatgctggcggtgctttcactctagtggtagcatgagacggcgtctacaacccacacaagtggctcaggtagtgcagctcatctaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagcagcaggactgctacctcctcctttgtgcaaggaggagcactgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgaggggccgacgtccacaggtgggggttgtgcttacagcccaacaccgtgcaggacgtttggcatttgccagaaaaCACCAAGactggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacactgagcacatgtgacagacgtgacagagtctggagacgccgtggagaacgttctgctgcctgcaacatcctccagcatgacaggtttggcggtgggtcagtcatggtctggggtggcctttctttgggggggccgcacagccctccatgtgctcgccagaggtagcctgactgccattaggtacagagatgagatcctcagaccccttgagaccatatgctggtgcggttggcactgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcatcagttcctgcaagaggaaggcattgatgctatggactggcccgtccgttccccagacctgaatccaattgagcacatcatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggagttggcggaagctttagtccaggtctgggaggagatccctcaggagaatatccgccacctcatcaggagcatgcccaggcgttatagggaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttggatcagcttgtagtgtggttttccactttaattttgtgagactccaaatccagacctccatgggttgatcaatttgatttccattgataatttgtgtgattgtagtcagcacattcaactatgtaaagaaaaaagtatttaataagaatatttaattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtacaagaTATCATCAAGAAGCATAACTATTCAAATAATTTCATTCAGTTTCATTGACTCCAAGTGCCGGGAAAGTTATCAAGATATATTTAGGGAAACACATCGGCACACATGATGCCCTCGGTCTTACAGCAACATTCCAGATTGAGTCGATAAGACCTAAACAACCTCCTCATACATGATTTAATCTTTGTCTAAGAATGCTATATGTGACATAAGAATAGATTAGGGTCGGTACCGGGAGGCTGTGTGTTTTGacttgcgcttgatggtttttgcgactgcacttgaagaaacttcaagTTCTTAACATTTTAcagattgactgatcttcatttcttaatgtaatgatggactatcatttctctttgcttatttcagctgttcttgccataatatggacttggtatttttgtataccacccctaccttgtcacaacacaactgattggctcaaacgcaacaAGGAagaaaattccacaaatgtacttttaacaaggcacacctgctaattgaaatggattccaggtgactacctcatgaagctggttgagagaatgccaagtatgcaaagctgtcatcaacgcagagggtggctactttgaatctcaaatatattttgatttgtttactatatgattccatatgtgttatttcatagttgtgatgtctttactattattctacaatgtagataatagtaaaaacaaagaaaaacctggaatgagtaagtgtccaaacatttgactggtacctTATGTAAATATGAAAAAGTCATTACGGGGCATTGTGTTGAGCATGTGCGCCCGTGTCcacgtgcatgcctgtgtgtacCTCTGCTACTTTGAGAAACTCTGACAGCTTGGTCATCCTGTAAAGGAACTTCTTATAGATGTCCAATGCGTCTTTACACTGACCCTTCTTCATATCAAAATATTTctCCAGTAAGTTGATGACGCCCTCGTTGTAGGCAGCAAACAGACGGATGGAGTCCTTGAACAACAGCATGAAGGCTGAGTTGATCACCCCGTTAGTTAACTCATTGGGGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986375 lncRNA upstream 12114 37552117 ~ 37553314 (+) True G1734478
TU1986373 lncRNA upstream 14979 37545149 ~ 37550449 (+) False G1734477
TU1986374 lncRNA upstream 14979 37545149 ~ 37550449 (+) True G1734477
TU1986357 lncRNA upstream 104252 37460555 ~ 37461176 (+) True G1734461
TU1986331 lncRNA upstream 158606 37406569 ~ 37406822 (+) True G1734435
TU1986447 lncRNA downstream 45625 37614578 ~ 37614813 (+) True G1734548
TU1986449 lncRNA downstream 50994 37619947 ~ 37620381 (+) True G1734550
TU1986462 lncRNA downstream 83427 37652380 ~ 37656769 (+) True LOC110500311
TU1986464 lncRNA downstream 87992 37656945 ~ 37657310 (+) True G1734553
TU1986451 lncRNA downstream 89268 37658221 ~ 37658728 (+) False G1734551
XM_036957730.1 mRNA upstream 27604 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA upstream 27604 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA upstream 27604 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA upstream 27604 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_036957729.1 mRNA upstream 254188 37248296 ~ 37311240 (+) False zgc:109889
XM_021577614.2 mRNA downstream 80549 37649502 ~ 37656152 (+) False LOC110500311
XR_002470081.2 mRNA downstream 132488 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 152165 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 189806 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 197701 37766654 ~ 37772954 (+) True rs4x
TU1986313 other upstream 193761 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 313253 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 806545 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1329163 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1522940 36041331 ~ 36042488 (+) True G1732735
TU1986710 other downstream 191382 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 474138 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 476155 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 508598 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1299014 38867967 ~ 38924928 (+) True arrb2b

Expression Profile