RNA id: TU1986464


Basic Information

Item Value
RNA id TU1986464
length 366
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1734553
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37656945 ~ 37657310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggttcgagatactgttgtgaagaagtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactatgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986462 lncRNA upstream 176 37652380 ~ 37656769 (+) True LOC110500311
TU1986449 lncRNA upstream 36564 37619947 ~ 37620381 (+) True G1734550
TU1986447 lncRNA upstream 42132 37614578 ~ 37614813 (+) True G1734548
TU1986375 lncRNA upstream 103631 37552117 ~ 37553314 (+) True G1734478
TU1986373 lncRNA upstream 106496 37545149 ~ 37550449 (+) False G1734477
TU1986451 lncRNA downstream 911 37658221 ~ 37658728 (+) False G1734551
TU1986450 lncRNA downstream 977 37658287 ~ 37658728 (+) True G1734551
TU1986496 lncRNA downstream 29256 37686566 ~ 37686803 (+) True G1734585
TU1986498 lncRNA downstream 32557 37689867 ~ 37690069 (+) True G1734587
TU1986499 lncRNA downstream 33603 37690913 ~ 37691131 (+) True G1734588
XM_021577614.2 mRNA upstream 793 37649502 ~ 37656152 (+) False LOC110500311
XM_036957730.1 mRNA upstream 119121 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA upstream 119121 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA upstream 119121 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA upstream 119121 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XR_002470081.2 mRNA downstream 44131 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 63808 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 101449 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 109344 37766654 ~ 37772954 (+) True rs4x
XR_005038750.1 mRNA downstream 110832 37768142 ~ 37768217 (+) True LOC118943013
TU1986376 other upstream 87992 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 285278 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 404770 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 898062 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1420680 36233122 ~ 36236265 (+) True LOC110500325
TU1986710 other downstream 103025 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 385781 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 387798 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 420241 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1210657 38867967 ~ 38924928 (+) True arrb2b

Expression Profile