RNA id: TU1986697


Basic Information

Item Value
RNA id TU1986697
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1734743
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37696759 ~ 37696991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataaaactagtgcagacacaggcaactagacatagacactaacccacgaaatacccaaagaagatggctgcctaaatatggttcccaatcagagacaacgataaacagctgcctctaattgagaaccaatctaggcaaccatagacacacataaacacctagatagtatacacccccataaacatacaaaacccatagacagtacaaaaacacatacatcacccatgtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986499 lncRNA upstream 5628 37690913 ~ 37691131 (+) True G1734588
TU1986498 lncRNA upstream 6690 37689867 ~ 37690069 (+) True G1734587
TU1986496 lncRNA upstream 9956 37686566 ~ 37686803 (+) True G1734585
TU1986451 lncRNA upstream 38031 37658221 ~ 37658728 (+) False G1734551
TU1986450 lncRNA upstream 38031 37658287 ~ 37658728 (+) True G1734551
TU1986699 lncRNA downstream 2427 37699418 ~ 37699937 (+) True G1734745
TU1986719 lncRNA downstream 19906 37716897 ~ 37717213 (+) True G1734762
TU1986706 lncRNA downstream 66421 37763412 ~ 37765535 (+) True cited1
TU1986764 lncRNA downstream 92414 37789405 ~ 37789781 (+) True G1734802
TU1986830 lncRNA downstream 191533 37888524 ~ 37888725 (+) True G1734864
XM_021577614.2 mRNA upstream 40607 37649502 ~ 37656152 (+) False LOC110500311
XM_036957730.1 mRNA upstream 158935 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XR_002470081.2 mRNA downstream 4450 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 24127 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 61768 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 69663 37766654 ~ 37772954 (+) True rs4x
XR_005038750.1 mRNA downstream 71151 37768142 ~ 37768217 (+) True LOC118943013
TU1986376 other upstream 127806 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 325092 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 444584 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 937876 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1460494 36233122 ~ 36236265 (+) True LOC110500325
TU1986710 other downstream 63344 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 346100 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 348117 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 380560 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1170976 38867967 ~ 38924928 (+) True arrb2b

Expression Profile