RNA id: TU1986764


Basic Information

Item Value
RNA id TU1986764
length 285
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1734802
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37789405 ~ 37789781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttcataaaccatatgTCAGGGAAtcagtacatcgaaaatctcttcCTAATTTTGgcctttaatgcagggccgacaggcaaactcctcactttctctctcttccacttgcctcttccattttttgcggtaatgctgcaattagttggttgtaattttgggtagagcagacatttccatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttgaaaagatgagagaggcctgtaattttcatcataggtacacttcaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986706 lncRNA upstream 23870 37763412 ~ 37765535 (+) True cited1
TU1986719 lncRNA upstream 72192 37716897 ~ 37717213 (+) True G1734762
TU1986699 lncRNA upstream 89468 37699418 ~ 37699937 (+) True G1734745
TU1986697 lncRNA upstream 92414 37696759 ~ 37696991 (+) True G1734743
TU1986499 lncRNA upstream 98274 37690913 ~ 37691131 (+) True G1734588
TU1986830 lncRNA downstream 98743 37888524 ~ 37888725 (+) True G1734864
TU1986844 lncRNA downstream 114841 37904622 ~ 37905024 (+) True G1734877
TU1986845 lncRNA downstream 116796 37906577 ~ 37906780 (+) True G1734878
TU1986891 lncRNA downstream 187319 37977100 ~ 37977958 (+) True G1734921
TU1986952 lncRNA downstream 253310 38043091 ~ 38045066 (+) True G1734960
NM_001165051.1 mRNA upstream 16451 37766654 ~ 37772954 (+) True rs4x
XR_005038747.1 mRNA upstream 17958 37771313 ~ 37771447 (+) True LOC118943010
XR_005038751.1 mRNA upstream 19482 37769848 ~ 37769923 (+) True LOC118943014
XR_005038750.1 mRNA upstream 21188 37768142 ~ 37768217 (+) True LOC118943013
XM_021577611.2 mRNA upstream 23843 37758759 ~ 37765562 (+) False cited1
XM_036957749.1 mRNA downstream 11277 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA downstream 22879 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA downstream 104202 37893983 ~ 37953220 (+) False nhsl2
XM_036957752.1 mRNA downstream 130510 37920291 ~ 37953220 (+) True nhsl2
XM_036957753.1 mRNA downstream 168236 37958017 ~ 38050782 (+) False arhgap36
TU1986710 other upstream 26147 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 220452 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 417738 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 537230 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1030522 36756989 ~ 36758883 (+) False G1733187
TU1986951 other downstream 253310 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 255327 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 287770 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1078186 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1389506 39179287 ~ 39209485 (+) True nat16

Expression Profile