RNA id: TU1986891


Basic Information

Item Value
RNA id TU1986891
length 436
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1734921
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37977100 ~ 37977958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggagggtatacgcAGGTATAAGCCGTGTACAAAAAACGAATTCAGTGGGCATTGCTTATactcagtggcgattttagCATGTAGCCTATGCAATTGCAAAGCACAGGAAATATATTCACATGCGTGGCGCAGACAGCCTAGTTTCATTTCAGGGGAATATCATCTGCAGACAGCAAGAGTGTGCAGCTCTCAGCTGGttttggcatggagcagctcacagaggAATGACATCGGTAGCCGGTCGGGTAGGAAAGATGTTTCCACTTGTGATGTCTATCAGTAAATTCTAACTAAGGCAACAATGGGTAAGCAAACCAGGTGTTGAAAAAGTTTAGTCCAAAGTGTTGGTTAGTAGGCTATTGGCGATGCACAATTGTCATCATACGCTGTTTGCATAAGGTGTGCAGACATGGATGGGCCTGGGTGGAcagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986845 lncRNA upstream 70320 37906577 ~ 37906780 (+) True G1734878
TU1986844 lncRNA upstream 72076 37904622 ~ 37905024 (+) True G1734877
TU1986830 lncRNA upstream 88375 37888524 ~ 37888725 (+) True G1734864
TU1986764 lncRNA upstream 187319 37789405 ~ 37789781 (+) True G1734802
TU1986706 lncRNA upstream 211565 37763412 ~ 37765535 (+) True cited1
TU1986952 lncRNA downstream 65133 38043091 ~ 38045066 (+) True G1734960
TU1986956 lncRNA downstream 69493 38047451 ~ 38047988 (+) True G1734963
TU1986817 lncRNA downstream 73125 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA downstream 73125 38051083 ~ 38056244 (+) True G1734853
TU1986973 lncRNA downstream 97796 38075754 ~ 38076214 (+) True G1734980
XM_036957749.1 mRNA upstream 23880 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA upstream 23880 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA upstream 23880 37893983 ~ 37953220 (+) False nhsl2
XM_036957752.1 mRNA upstream 23880 37920291 ~ 37953220 (+) True nhsl2
NM_001165051.1 mRNA upstream 204146 37766654 ~ 37772954 (+) True rs4x
XM_036957754.1 mRNA downstream 15143 37993101 ~ 38050782 (+) True arhgap36
XM_021577605.2 mRNA downstream 99025 38076983 ~ 38083972 (+) False LOC110500301
XM_021577652.2 mRNA downstream 155101 38133059 ~ 38166964 (+) False LOC110500338
XM_036957757.1 mRNA downstream 317472 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 317472 38295430 ~ 38482345 (+) False col4a6
TU1986710 other upstream 213842 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 408147 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 605433 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 724925 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1218217 36756989 ~ 36758883 (+) False G1733187
TU1986951 other downstream 65133 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 67150 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 99593 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 890009 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1201329 39179287 ~ 39209485 (+) True nat16

Expression Profile