RNA id: TU1986954


Basic Information

Item Value
RNA id TU1986954
length 1369
RNA type TUCP
GC content 0.42
exon number 2
gene id G1734961
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38045108 ~ 38046506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCAGTATAGTAAGAGCTTGATAACATTGTGTTATTACAATGTCATTAGAATGTTACTTTGTTATTACAATGTCGCTGGTTTTGGAGGATTCAAGCACTGTTAAGGACAACAAACCCTATCAACAAACCAAAGCCAAGTTGGCCAAGCGGTATCAACGATGGCATCAAACCATCCCCAAGCAAGAGGGCGCGCGTGGGGAGAGGTTTACGGATAggaatgttgacttgttgaaaTCCATCAATGAAAGGCTTGCCAAACTTGATATCTTGGATATACTACGAGAGGACATCAATGCATTATGTGCCAGTCTAGAATTCAGCCAATATCGGATTGATGATCTAAGGAAAGAGAACACGGCGCTGAAAGGTACTGTAGACTctattcatagtggaggtggtgCCAAAGGGGAACAAACAACTTAAAGAAACCTTGCTTGATGTACAGTGTCGATCAATGCGGGACAATCTCATCTTTTCAGGGGGACCGGAGAATGACAACAGCAGAGGCTGTGAGGACACTGTCCGGGACATTATGTCAACTCAACTGAAACTGCCCACAGATGTGGTGCGTAATGTCACTTTCTCCAGAGTCCTTAGAATGTCCACTTTCTCCAGAGTCCCCTCCAGAGTCCTTAGCCTTTTCCCAGAAGCCTTTGGGAAAAGGCCACGGGCTATTATTGCAGGTTTTGAAAATGTTAAGCAAAAGGAAATGGCAAAGAGCTGGTGCAGAGAACTCCGAAACACTGACTTTGGAATGAATGATCACTTCCCCCACGGAGATCAATGAAAAGAGAAAGAAACTGTATCGCATCATGAAAGAAAAGCGTTGCCTGAACCAACGAGTTTCCTTGGTGATGGATAAACTTTACATCAATGGGaaactgtatcgggactctagagtaactccctggttaTTTTAATCCAATGTTCAAATCTGAgtttgtgtgttgtagtgtgtcatGTCAACTTCAACTATAACGAATACATGCTCTATTGATCTTTACTTGACAAGGAAAGGGCTGCATATAGCTCAGGTTAATGTATGCAGCCTTCCTAACAAAATACATTCTCTTTTTTTTACTTGGTCAACATAAATAAAATTCATATTTTAGCTTTGACCGAAATGCATTTGGATGCATCTGTAAATGATGGGCAAAGGAACATTAACGGATATAGTCTCCTTGGAAGGGACAGGAATGGGAATGGTGGGGGTGTAGCACTGTGCATTCAGAATCCTATGCATTAAGGTCATCCCTCCTCTTAAAAGGaatgtcaatttatttattttctacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatggcggcctaggaacagtgggttcagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986952 lncRNA upstream 42 38043091 ~ 38045066 (+) True G1734960
TU1986891 lncRNA upstream 67150 37977100 ~ 37977958 (+) True G1734921
TU1986845 lncRNA upstream 138328 37906577 ~ 37906780 (+) True G1734878
TU1986844 lncRNA upstream 140084 37904622 ~ 37905024 (+) True G1734877
TU1986830 lncRNA upstream 156383 37888524 ~ 37888725 (+) True G1734864
TU1986956 lncRNA downstream 945 38047451 ~ 38047988 (+) True G1734963
TU1986817 lncRNA downstream 4577 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA downstream 4577 38051083 ~ 38056244 (+) True G1734853
TU1986973 lncRNA downstream 29248 38075754 ~ 38076214 (+) True G1734980
TU1986974 lncRNA downstream 29957 38076463 ~ 38076967 (+) True G1734981
XM_036957749.1 mRNA upstream 91888 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA upstream 91888 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA upstream 91888 37893983 ~ 37953220 (+) False nhsl2
XM_036957752.1 mRNA upstream 91888 37920291 ~ 37953220 (+) True nhsl2
XR_005038747.1 mRNA upstream 273661 37771313 ~ 37771447 (+) True LOC118943010
XM_021577605.2 mRNA downstream 30477 38076983 ~ 38083972 (+) False LOC110500301
XM_021577652.2 mRNA downstream 86553 38133059 ~ 38166964 (+) False LOC110500338
XM_036957757.1 mRNA downstream 248924 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 248924 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 248924 38295430 ~ 38482345 (+) False col4a6
TU1986951 other upstream 42 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 281850 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 476155 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 673441 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 792933 37248627 ~ 37252175 (+) False zgc:109889
TU1986976 other downstream 31045 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 821461 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1132781 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1187158 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1829250 39875756 ~ 39876950 (+) True G1736484

Expression Profile