RNA id: TU1986956


Basic Information

Item Value
RNA id TU1986956
length 501
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1734963
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38047451 ~ 38047988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaaaaacattattttaaaacaatGCTTTTATTGATTgtaaaaatTTGGTACATCTCATCATGCCCATCTAGTGTGGAGGGTGACGGCAGAACAATAACAAAACCAGCTGATATTGCCAATCatcctattgaagtcattacccAATGGTAAATTTGGTTATGATCTTATGGACAATTTTTTACTTCGCTATGCTGCTCCCCAGATTGCAGATCCTTTGAAATACATATTTAATTGGATCACTGGAAAAGGggacattttcaaatatatggACGCATGCTGAACTGTGTCCAACCCTGAAAGACAGCAAAGAACCCATTACTCCTGCCAATAGTTGACCAATTAGTCTACTCCCTTCACTCATtaagatattggagggtattgtgagtagacaaatATGGGAGTACATAGAAAGGAATGATCTGatcacagccaatcagcatgcgtATTGCCAAAATTGAATTGAACTggttgacatgactgaccagAGGCTCAATGCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986952 lncRNA upstream 2385 38043091 ~ 38045066 (+) True G1734960
TU1986891 lncRNA upstream 69493 37977100 ~ 37977958 (+) True G1734921
TU1986845 lncRNA upstream 140671 37906577 ~ 37906780 (+) True G1734878
TU1986844 lncRNA upstream 142427 37904622 ~ 37905024 (+) True G1734877
TU1986830 lncRNA upstream 158726 37888524 ~ 37888725 (+) True G1734864
TU1986817 lncRNA downstream 3095 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA downstream 3095 38051083 ~ 38056244 (+) True G1734853
TU1986973 lncRNA downstream 27766 38075754 ~ 38076214 (+) True G1734980
TU1986974 lncRNA downstream 28475 38076463 ~ 38076967 (+) True G1734981
TU1986938 lncRNA downstream 39443 38087431 ~ 38087888 (+) False G1734959
XM_036957749.1 mRNA upstream 94231 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA upstream 94231 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA upstream 94231 37893983 ~ 37953220 (+) False nhsl2
XM_036957752.1 mRNA upstream 94231 37920291 ~ 37953220 (+) True nhsl2
XR_005038747.1 mRNA upstream 276004 37771313 ~ 37771447 (+) True LOC118943010
XM_021577605.2 mRNA downstream 28995 38076983 ~ 38083972 (+) False LOC110500301
XM_021577652.2 mRNA downstream 85071 38133059 ~ 38166964 (+) False LOC110500338
XM_036957757.1 mRNA downstream 247442 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 247442 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 247442 38295430 ~ 38482345 (+) False col4a6
TU1986954 other upstream 945 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 2385 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 284193 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 478498 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 675784 37370957 ~ 37371667 (+) True G1734420
TU1986976 other downstream 29563 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 819979 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1131299 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1185676 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1827768 39875756 ~ 39876950 (+) True G1736484

Expression Profile