RNA id: TU1986987



Basic Information


Item Value
RNA id TU1986987
length 657
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G1734991
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38202302 ~ 38203063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAACGTTTCCACACAAAACGATGGACATGGGGTTTATTTTTCAGTCTTAAAAGTTTATAACAACTTCTGGATAAcataacataaaaaataaaataaaaaacagattttttaaaATGAATAAATGTCACCCCATGATGACATTACAAATTAAAAATAAGATTTGAAAAACAACATCACAGGAAGAATCTTCCCCCCACAGCTCTCCTCGTTGACCGTAGAATAGAAAAAGAAAGAATAGAACAAATTCTATTTGATTCTATTCTCGCAGTACGTAACATTACATGCATACCTACCACGCGCTAGTTCATAGTGGGACAACCTAGACCAGTGTTAAGATGTGAATTCATATCAATAATATACATTTTCAGGAGTGGAGATTTTATCATCAACCTGTTATGGCATGAAATCGGGTCATTTTCTAACCCCCCATTTAACTATTGAACGATAGATTACTAGTAGAAATCAAATACAAAAGCTTGAGTGATTGGCATTATCATACACAGTACATGATCATAATAGGATAGGGTTTTTGATTGGTTGGCAGGGAAACTTTGTTTACTCAGTTTCGTTGTCATGCCAATAGTTTTGtgaaatgtgaaaaaaaaattACCTTTTGGAGATAAAAATAATGAATGATGGAAAATAAACTCCCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1987010 lncRNA upstream 35443 38165201 ~ 38166964 (+) True LOC110500338
TU1987011 lncRNA upstream 37657 38163027 ~ 38164750 (+) False LOC110500338
TU1987001 lncRNA upstream 88873 38112886 ~ 38113534 (+) True G1735004
TU1986983 lncRNA upstream 108206 38093844 ~ 38094201 (+) True G1734990
TU1986982 lncRNA upstream 110182 38091986 ~ 38092225 (+) True G1734989
TU1987054 lncRNA downstream 23639 38226702 ~ 38227910 (+) False G1735056
TU1987055 lncRNA downstream 23865 38226928 ~ 38227910 (+) True G1735056
TU1987501 lncRNA downstream 92467 38295530 ~ 38296212 (+) True col4a6
TU1987517 lncRNA downstream 102810 38305873 ~ 38306132 (+) True G1735479
TU1987521 lncRNA downstream 105919 38308982 ~ 38309288 (+) True G1735483
XM_021577652.2 mRNA upstream 35443 38133059 ~ 38166964 (+) False LOC110500338
XM_021577605.2 mRNA upstream 118435 38076983 ~ 38083972 (+) False LOC110500301
XM_036957753.1 mRNA upstream 151625 37958017 ~ 38050782 (+) False arhgap36
XM_036957757.1 mRNA downstream 92367 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 92367 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 92367 38295430 ~ 38482345 (+) False col4a6
XM_036957761.1 mRNA downstream 92367 38295430 ~ 38482345 (+) False col4a6
XM_036957763.1 mRNA downstream 92367 38295430 ~ 38482345 (+) False col4a6
TU1986976 other upstream 120133 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 155901 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 157341 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 439149 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 633454 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 664904 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 976224 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1030601 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1672693 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1859643 40062706 ~ 40063325 (+) True G1737353

Expression Profile