RNA id: TU1987055


Basic Information

Item Value
RNA id TU1987055
length 449
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1735056
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38226702 ~ 38227910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATGAGGTTATAGAACATGATGGTGGGGATATGAGGTTATAGAATATGATGGTGGGATATGAGGTTATAACACATGATGGTGGGAATATGAGGTTATAGAACATGATGGTGGGGATATGAGGTTATAGaacatgatggtgatggtggggatATGATGTTATAGAACATGATGGTGGGATATGAGGTTATAACACATAATGGTGGGGATATGAGGTTATAGAACATGATGGTGGGGATATGAGGTTATAGaacatgatggtgatggtggggatATGAGGTTATAGAACATGATGGTGGGGATATGAGGTTATTGAACATGATGGTGGGGATATGAGGTTATAGAACATAATGGTGTGGATTTGAGGTTATAGAACATGATGGTAGGGATATGAGGTTATAGAACATGATGGTGGGGATATGAGGTTATAGaacatgatggtgatggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986986 lncRNA upstream 23865 38202302 ~ 38203063 (+) False G1734991
TU1986987 lncRNA upstream 23865 38202407 ~ 38203063 (+) False G1734991
TU1986988 lncRNA upstream 23865 38202472 ~ 38203063 (+) True G1734991
TU1987010 lncRNA upstream 59964 38165201 ~ 38166964 (+) True LOC110500338
TU1987011 lncRNA upstream 62178 38163027 ~ 38164750 (+) False LOC110500338
TU1987501 lncRNA downstream 67620 38295530 ~ 38296212 (+) True col4a6
TU1987517 lncRNA downstream 77963 38305873 ~ 38306132 (+) True G1735479
TU1987521 lncRNA downstream 81072 38308982 ~ 38309288 (+) True G1735483
TU1987504 lncRNA downstream 82096 38310006 ~ 38310217 (+) True G1735466
TU1987546 lncRNA downstream 117040 38344950 ~ 38345150 (+) True G1735507
XM_021577652.2 mRNA upstream 59964 38133059 ~ 38166964 (+) False LOC110500338
XM_021577605.2 mRNA upstream 142956 38076983 ~ 38083972 (+) False LOC110500301
XM_036957753.1 mRNA upstream 176146 37958017 ~ 38050782 (+) False arhgap36
XM_036957757.1 mRNA downstream 67520 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 67520 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 67520 38295430 ~ 38482345 (+) False col4a6
XM_036957761.1 mRNA downstream 67520 38295430 ~ 38482345 (+) False col4a6
XM_036957763.1 mRNA downstream 67520 38295430 ~ 38482345 (+) False col4a6
TU1986976 other upstream 144654 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 180422 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 181862 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 463670 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 657975 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 640057 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 951377 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1005754 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1647846 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1834796 40062706 ~ 40063325 (+) True G1737353

Expression Profile