RNA id: TU1987748


Basic Information

Item Value
RNA id TU1987748
length 293
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1735700
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38498809 ~ 38499101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatactactgacaacatttctcccaaattccaaataaaaatctaacagcttactacacaacatacacttagtattactttcttagctacagtatacatatctccctggaatattacataatttatgcagcagcatacaatacatttttggactcaccttgtgctgtgctcacttgaacaggaaggtgatgTGGCAGTCCTTCATGGGCAAATGTTGTCcttaaagtctggcattctctggatttatggtgctttcaagacaactgggaactctgaaaaacacaatgTTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987602 lncRNA upstream 52293 38443620 ~ 38446516 (+) True G1735560
TU1987546 lncRNA upstream 153659 38344950 ~ 38345150 (+) True G1735507
TU1987504 lncRNA upstream 188592 38310006 ~ 38310217 (+) True G1735466
TU1987521 lncRNA upstream 189521 38308982 ~ 38309288 (+) True G1735483
TU1987517 lncRNA upstream 192677 38305873 ~ 38306132 (+) True G1735479
TU1987749 lncRNA downstream 273 38499374 ~ 38499584 (+) True G1735701
TU1987771 lncRNA downstream 16131 38515232 ~ 38516261 (+) True G1735723
TU1987804 lncRNA downstream 47095 38546196 ~ 38546703 (+) True G1735756
TU1987820 lncRNA downstream 75857 38574958 ~ 38576555 (+) True G1735770
TU1987823 lncRNA downstream 84405 38583506 ~ 38583798 (+) True G1735773
XM_021577655.2 mRNA upstream 2144 38483403 ~ 38496665 (+) True ankrd46b
XM_036957757.1 mRNA upstream 16464 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA upstream 16464 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA upstream 16464 38295430 ~ 38482345 (+) False col4a6
XM_036957761.1 mRNA upstream 16464 38295430 ~ 38482345 (+) False col4a6
XR_005038591.1 mRNA downstream 7003 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA downstream 7003 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA downstream 7364 38506465 ~ 38514584 (+) True LOC118942926
XM_036957767.1 mRNA downstream 43278 38542379 ~ 38654406 (+) True LOC110515117
XM_021577658.2 mRNA downstream 162983 38662084 ~ 38718323 (+) False LOC110500343
TU1986976 other upstream 416535 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 452303 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 453743 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 735551 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 929856 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 368866 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 680186 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 734563 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1376655 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1563605 40062706 ~ 40063325 (+) True G1737353

Expression Profile