RNA id: TU1987820


Basic Information

Item Value
RNA id TU1987820
length 558
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1735770
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38574958 ~ 38576555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAGTAACAACACGTGACTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAGTAACAACACGTGACTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAATAACAACACGTGACTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAGTAACAACACGTGACTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAGTAACAACACGTGACTGAGGACTACCCCGTCgttgtgtatgtgtacctttTAATAACAACACGTGACTGAGGACCACCCGGAAAGGTTCTTGTCAGATAAGGTGGCAGGTGAAATGAATACGTTCAGCAGTATTGACGGTGTAGGAAAAACCATCCCATGGCTATTTCCCGCACAACTATTTGATACAGAGCATTTTGACAGTGCTTCTTTTAGAAAACCAGCGATATGTGTCTACAAGCAGTTGTAGCTACAGACACgcatgtctgtctttgtctgtttcagtgtgtttgtgGAATCCCATGTGTTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987804 lncRNA upstream 28255 38546196 ~ 38546703 (+) True G1735756
TU1987771 lncRNA upstream 58697 38515232 ~ 38516261 (+) True G1735723
TU1987749 lncRNA upstream 75374 38499374 ~ 38499584 (+) True G1735701
TU1987748 lncRNA upstream 75857 38498809 ~ 38499101 (+) True G1735700
TU1987602 lncRNA upstream 128442 38443620 ~ 38446516 (+) True G1735560
TU1987823 lncRNA downstream 6951 38583506 ~ 38583798 (+) True G1735773
TU1987834 lncRNA downstream 15774 38592329 ~ 38628409 (+) True G1735778
TU1987844 lncRNA downstream 30635 38607190 ~ 38609125 (+) False G1735784
TU1987845 lncRNA downstream 30635 38607190 ~ 38609125 (+) True G1735784
TU1987856 lncRNA downstream 51229 38627784 ~ 38628152 (+) True G1735795
XR_005038591.1 mRNA upstream 60374 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA upstream 60374 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA upstream 60374 38506465 ~ 38514584 (+) True LOC118942926
XM_021577655.2 mRNA upstream 78293 38483403 ~ 38496665 (+) True ankrd46b
XM_036957758.1 mRNA upstream 92613 38295506 ~ 38482345 (+) False col4a6
XM_021577658.2 mRNA downstream 85529 38662084 ~ 38718323 (+) False LOC110500343
XM_021577659.2 mRNA downstream 85529 38662084 ~ 38720802 (+) False LOC110500343
XM_036957768.1 mRNA downstream 85538 38662093 ~ 38720802 (+) True LOC110500343
XM_036957770.1 mRNA downstream 149877 38726432 ~ 38739708 (+) False LOC110500344
XM_036957772.1 mRNA downstream 149877 38726432 ~ 38739708 (+) False LOC110500344
TU1986976 other upstream 492684 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 528452 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 529892 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 811700 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 1006005 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 291412 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 602732 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 657109 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1299201 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1486151 40062706 ~ 40063325 (+) True G1737353

Expression Profile