RNA id: TCONS_00051044


Basic Information

Item Value
RNA id TCONS_00051044
length 1560
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_026129
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9984415 ~ 10014575 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGAAATAAATGGTCATAACACAAATCGAATAGTACTTTAATCCGACCAGTTAATCAATAATAGGCCTACTGAGATGAATTTGTGAATGATTCAAATCCACAGCGCGCATATCAGTGCAATTCGACTCATGAACAAATGATTCTTTTGAATCAGTTCTCGTGATGAATCGTTCATTTCTAAAACGGTCATTGGCTCAGTCTGTTTGAACTGTGAGCGCGTCAACTGAACCAACAGAATCGGCTCGTTTTGTGGTGCTTTTGGAAGATATTTAACTTCACAAAATGAACATAAAGTCATATGTAATTAACAACTGTCGGTTTTATGACAAGACGTGTCACACTGTTGCGATGTGGTGTATTTTTGGCCTCGGAAGTTCGCTGAGATGAAACAACGcacagctggaccatcatcataaaATCACAACCAAAGGCAAACAAGACCGCAACGTATTTCCAGCATCTCTTCatcagaggaagaggaggagggacATACGACTTCATTGAGGAGATTACAGCgatcgcgcgcacacacacaacacaccacTACAGATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc

Function

GO:

id name namespace
GO:0032183 SUMO binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052435 lncRNA downstream 84986 9896216 ~ 9899429 (-) True XLOC_026127
TCONS_00051042 lncRNA downstream 222877 9754014 ~ 9761538 (-) True XLOC_026126
TCONS_00051041 lncRNA downstream 231564 9744455 ~ 9752851 (-) True XLOC_026125
TCONS_00052943 lncRNA downstream 256591 9724766 ~ 9727824 (-) True XLOC_026123
TCONS_00052942 lncRNA downstream 256617 9723816 ~ 9727798 (-) False XLOC_026123
TCONS_00052436 lncRNA upstream 3782 10018357 ~ 10025630 (-) True XLOC_026130
TCONS_00052948 lncRNA upstream 46397 10060972 ~ 10134755 (-) True XLOC_026131
TCONS_00052949 lncRNA upstream 47613 10062188 ~ 10136843 (-) False XLOC_026132
TCONS_00052950 lncRNA upstream 47613 10062188 ~ 10137141 (-) True XLOC_026132
TCONS_00052951 lncRNA upstream 237584 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00051040 mRNA downstream 245430 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051039 mRNA downstream 261812 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051038 mRNA downstream 413106 9564237 ~ 9571309 (-) True XLOC_026121
TCONS_00051036 mRNA downstream 415154 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00051048 mRNA upstream 295515 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051049 mRNA upstream 392883 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051050 mRNA upstream 521382 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA upstream 559608 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051053 mRNA upstream 578022 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051043 other downstream 70026 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051030 other downstream 952648 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051029 other downstream 959863 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051028 other downstream 1049939 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00050944 other downstream 3756269 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00051045 other upstream 164616 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 172458 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051047 other upstream 198523 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051051 other upstream 521899 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051071 other upstream 1343943 11358518 ~ 11362383 (-) True XLOC_026160

Expression Profile

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