RNA id: TU1987845


Basic Information

Item Value
RNA id TU1987845
length 421
lncRNA type intronic
GC content 0.30
exon number 2
gene id G1735784
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38607190 ~ 38609125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCATTgtcatacagtagtagtagtagtagtagtcatattcaaaatcattgtcatacagtagtagtagtagtagtagtagtagtagtagtagtagtagtcatattcaaaatcattgtcatacagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtcatattcATAATCATTgtcatacagtagtagtagtagtagtggtagtcatATTCATAATCATTGTCatacagtaatagtagtagtagtagtagtagtagtagtagtcatattcaaaatcattgtcatacagtagtagtagtagtaatagtcatATTCATAATCATTgtcatacagtagtagtagtagtagtagtagtggtagtcatATTCATAATCATTgtcatacagtagtagtagtagtagtagtagtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987823 lncRNA upstream 23392 38583506 ~ 38583798 (+) True G1735773
TU1987820 lncRNA upstream 30635 38574958 ~ 38576555 (+) True G1735770
TU1987804 lncRNA upstream 60487 38546196 ~ 38546703 (+) True G1735756
TU1987771 lncRNA upstream 90929 38515232 ~ 38516261 (+) True G1735723
TU1987749 lncRNA upstream 107606 38499374 ~ 38499584 (+) True G1735701
TU1987856 lncRNA downstream 18659 38627784 ~ 38628152 (+) True G1735795
TU1987882 lncRNA downstream 60284 38669409 ~ 38669923 (+) True G1735820
TU1988007 lncRNA downstream 334053 38943178 ~ 38955401 (+) True G1735932
TU1988000 lncRNA downstream 356916 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA downstream 356916 38966041 ~ 38982550 (+) True LOC110500354
XR_005038591.1 mRNA upstream 92606 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA upstream 92606 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA upstream 92606 38506465 ~ 38514584 (+) True LOC118942926
XM_021577655.2 mRNA upstream 110525 38483403 ~ 38496665 (+) True ankrd46b
XM_036957758.1 mRNA upstream 124845 38295506 ~ 38482345 (+) False col4a6
XM_021577658.2 mRNA downstream 52959 38662084 ~ 38718323 (+) False LOC110500343
XM_021577659.2 mRNA downstream 52959 38662084 ~ 38720802 (+) False LOC110500343
XM_036957768.1 mRNA downstream 52968 38662093 ~ 38720802 (+) True LOC110500343
XM_036957770.1 mRNA downstream 117307 38726432 ~ 38739708 (+) False LOC110500344
XM_036957772.1 mRNA downstream 117307 38726432 ~ 38739708 (+) False LOC110500344
TU1986976 other upstream 524916 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 560684 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 562124 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 843932 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 1038237 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 258842 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 570162 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 624539 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1266631 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1453581 40062706 ~ 40063325 (+) True G1737353

Expression Profile