RNA id: TU1987882


Basic Information

Item Value
RNA id TU1987882
length 322
lncRNA type intronic
GC content 0.23
exon number 2
gene id G1735820
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38669409 ~ 38669923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACATCATCATAAAACAATAGGCTACATCATAATAATACAATACATCATAATAAAACAATAGGCTACATCATAATAATACAATACATCATCATAAAACAATAGGCTACATCATAATACAATACATCATCATAAAACAATAGGCTACAtcataataaaacaatacatcataataaAACAATAGGCTACATCATAATAATACAATACATCATAATAAAACAATAGGCTACATCATAATAATACAATACATCATCATAAAACAATAGGCTACATCATAATAATACAATACATCATAATAAAACAATAGGCTACATCATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987834 lncRNA upstream 41000 38592329 ~ 38628409 (+) True G1735778
TU1987856 lncRNA upstream 41257 38627784 ~ 38628152 (+) True G1735795
TU1987844 lncRNA upstream 60284 38607190 ~ 38609125 (+) False G1735784
TU1987845 lncRNA upstream 60284 38607190 ~ 38609125 (+) True G1735784
TU1987823 lncRNA upstream 85611 38583506 ~ 38583798 (+) True G1735773
TU1988007 lncRNA downstream 273255 38943178 ~ 38955401 (+) True G1735932
TU1988000 lncRNA downstream 296118 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA downstream 296118 38966041 ~ 38982550 (+) True LOC110500354
TU1988066 lncRNA downstream 364586 39034509 ~ 39089363 (+) False G1735986
TU1988068 lncRNA downstream 364586 39034509 ~ 39089363 (+) False G1735986
XM_036957767.1 mRNA upstream 15003 38542379 ~ 38654406 (+) True LOC110515117
XR_005038591.1 mRNA upstream 154825 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA upstream 154825 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA upstream 154825 38506465 ~ 38514584 (+) True LOC118942926
XM_021577655.2 mRNA upstream 172744 38483403 ~ 38496665 (+) True ankrd46b
XM_036957770.1 mRNA downstream 56509 38726432 ~ 38739708 (+) False LOC110500344
XM_036957772.1 mRNA downstream 56509 38726432 ~ 38739708 (+) False LOC110500344
XM_036957773.1 mRNA downstream 56509 38726432 ~ 38739708 (+) False LOC110500344
XM_036957769.1 mRNA downstream 56510 38726433 ~ 38739708 (+) False LOC110500344
XM_036957775.1 mRNA downstream 56510 38726433 ~ 38739708 (+) False LOC110500344
TU1986976 other upstream 587135 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 622903 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 624343 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 906151 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 1100456 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 198044 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 509364 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 563741 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1205833 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1392783 40062706 ~ 40063325 (+) True G1737353

Expression Profile