RNA id: TU1988068


Basic Information

Item Value
RNA id TU1988068
length 528
lncRNA type read_through
GC content 0.45
exon number 2
gene id G1735986
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39034509 ~ 39178178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgcacacacacacacacacacacacacacacacacatgcccacggATGCatgcatacacgcacacacacatacacacagtcttcaGAGGTACTGTAATGACACACCTTTGAAATGTTCACCGTTTCACAGCCTTCATCAATGACCACCTCCTTCCATAATACATTTGATGCTGATAAATTGTCAGCTTATGGACGTGTTTTAGACAGCCAAACATCTGCAatggaaaaacaaaaaacacacagaaaGTATGAATTGTGACACATTAAATGTGATTTTGTGGGGGAAAGGAATCCACTGTTTGGCCTTCGTCGAGTTAAACTGCAAAGCCTTAACAAATCATATCACATGAAGAAATGTAGGAAACTATGGAAGGACAAGGTCTtcatcatctctttctctctctcctcagaggtCAGTGCAGCGCTCCTGCTTGCTGTAATGGTCGAACTGGCTCTTCCAGTGCATCATGTAGGAGGACCAGCGATGGAACTCCACCTTCCACTGACGCTCCGCCTCATCTATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988000 lncRNA upstream 51959 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA upstream 51959 38966041 ~ 38982550 (+) True LOC110500354
TU1988007 lncRNA upstream 79108 38943178 ~ 38955401 (+) True G1735932
TU1987882 lncRNA upstream 364586 38669409 ~ 38669923 (+) True G1735820
TU1987856 lncRNA upstream 406357 38627784 ~ 38628152 (+) True G1735795
TU1988147 lncRNA downstream 14592 39103955 ~ 39105859 (+) True G1736042
TU1988173 lncRNA downstream 54347 39143710 ~ 39144316 (+) True G1736065
TU1988128 lncRNA downstream 59033 39148396 ~ 39154391 (+) False LOC118942927
TU1988129 lncRNA downstream 59033 39148396 ~ 39154522 (+) True LOC118942927
TU1988204 lncRNA downstream 102079 39191442 ~ 39191854 (+) True G1736093
XM_036957784.1 mRNA upstream 11645 39003738 ~ 39022864 (+) False zgc:92664
XR_005038594.1 mRNA downstream 49179 39138542 ~ 39154346 (+) False LOC118942927
XM_021577689.2 mRNA downstream 89784 39179147 ~ 39211035 (+) False nat16
XR_005038595.1 mRNA downstream 89784 39179147 ~ 39211035 (+) False nat16
XR_005038596.1 mRNA downstream 89784 39179147 ~ 39211035 (+) False nat16
XM_036957789.1 mRNA downstream 139285 39228648 ~ 39237917 (+) False LOC110500362
TU1987950 other upstream 109581 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 952235 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 988003 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 989443 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1271251 37760335 ~ 37763258 (+) False cited1
TU1988123 other downstream 89924 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 144301 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 786393 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 973343 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1312141 40401504 ~ 40403685 (+) True LOC110500409

Expression Profile