RNA id: TU1988072


Basic Information

Item Value
RNA id TU1988072
length 1589
lncRNA type read_through
GC content 0.45
exon number 2
gene id G1735986
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39034509 ~ 39178178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtATCTAAATAATTACAGATAGTCTTTGACTTtttcattttatatatatatttttttaaagctagACTACTCTACTCCAGTCGTTAAATAGGAGTTGTACATGCCGGTGAATACACCACTCATAATGATTCGATGAAAGACCCACTGACCAATCACAAGGCTGATCCTGATCCCTTCCACAATGTCAACAAACGCAAGTTCAAATAAATATGACATTCCACATATGACATCACAAAAGTATGACATCATGCAAAAACTGTATAGAGACGGGCGGATGGACACACAGACAAGTAGACAAAcacaagcagagagacagaggtggacaCAGatggacaaacaaacaaacaaaaggtaGACTCACAGTGACAGACAATTAGACACACATACGGagaacacacaaagacagacagacggacggattTCTCATGTCAAAGTCCCGGCGAGAGCAGCCAAACTCAGAACAATCTCAACAGATACGGAAGTGATCGTTAAACACTCCACACAGACAGTCTCTTACACTCTGACATCTGTAGTTGGTTTAAACCTGAAGAATGCAACTGCAAAATAAAATACTGAAAAAGAGTAACAAAAACCCACACATATAGTACGTATATGTCACATTAATGATAAATAACCTTAGTATAGACAAGAGTGGAGTACGTAACCCTGTTTTCTTTTTCCTTccatcttcccctctctttttatctttaccctctctctctccatttcccacTCACCCTtgctccatctctcatctctcctacccatgctctccatctctcgcccctctctcaccctcctccctctctctccatcagcccCAGCCACTGCAGCAGTGCAGTACAGCCCAGCCAGGGCCTGTCTGTCTCATAGCCAGCGAATGGCTGACGCAGCATCCTGTCGTTTCACTGGAGCACTgaatttaacacacacacacacacacacacacacacacacacaccgacagacagacacacactgagtgAATTACTTCAGTCTCCATTAGACTAACGAGAACCGTTCGTCCTCTggggacatggagagatggaggagagagagatggaggagagagagatgaggggaaggtggagagagagtggggggggggggggttgagacgggagagagatggataggacaaaagagagagatggaggggagcgAGACACATCGACCCGTTGGCACGGAGACAATATTAgtagtatgcacacacacacaccctcacgcCCACAAAATATAATACTTTACTGCATTCTGACGCTAGAACAAACAACAGTGGGTGTGACTGACATTCACAAGTGCTTGGCTACATATAGGTGATTGACAGAGGTATGTGGATATATACCGACAAGTGCATACAAACACTATCGCTCTcgcacacaccaaaacacacacacacacaccgaaacaCACAGAGTGGATTGAGAAACGTGCACGGAGTTCAGCGATGAAGTTCAGCGATGAACAAGATAGACGTGTGACATATAACATGACTACATGTCTATCTTGTTGATCGCTGAACTTGTGAGTACTGGTCCTCCGTGCACGCTtttccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988000 lncRNA upstream 103955 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA upstream 103955 38966041 ~ 38982550 (+) True LOC110500354
TU1988007 lncRNA upstream 131104 38943178 ~ 38955401 (+) True G1735932
TU1987882 lncRNA upstream 416582 38669409 ~ 38669923 (+) True G1735820
TU1987856 lncRNA upstream 458353 38627784 ~ 38628152 (+) True G1735795
TU1988204 lncRNA downstream 13264 39191442 ~ 39191854 (+) True G1736093
TU1988248 lncRNA downstream 117884 39296062 ~ 39302368 (+) True G1736133
TU1988269 lncRNA downstream 162460 39340638 ~ 39362957 (+) False G1736154
TU1988270 lncRNA downstream 162460 39340638 ~ 39343652 (+) False G1736154
TU1988271 lncRNA downstream 162460 39340638 ~ 39347163 (+) True G1736154
XM_036957784.1 mRNA upstream 63641 39003738 ~ 39022864 (+) False zgc:92664
XM_021577689.2 mRNA downstream 969 39179147 ~ 39211035 (+) False nat16
XR_005038595.1 mRNA downstream 969 39179147 ~ 39211035 (+) False nat16
XR_005038596.1 mRNA downstream 969 39179147 ~ 39211035 (+) False nat16
XM_036957789.1 mRNA downstream 50470 39228648 ~ 39237917 (+) False LOC110500362
XM_036957788.1 mRNA downstream 50473 39228651 ~ 39237917 (+) True LOC110500362
TU1987950 other upstream 161577 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1004231 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1039999 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 1041439 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1323247 37760335 ~ 37763258 (+) False cited1
TU1988123 other downstream 1109 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 55486 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 697578 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 884528 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1223326 40401504 ~ 40403685 (+) True LOC110500409

Expression Profile