RNA id: TCONS_00052948


Basic Information

Item Value
RNA id TCONS_00052948
length 1099
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_026131
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10060972 ~ 10134755 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTAAAAGGCAATCTTGTATTGCACCTCTGAGTTCCTCAGATACATCTGACTGATTTCTGTATTTCAAAccaattttgaatttttttctctctaaCTCAAATATATTAGAATCATCCTCGGTAAAAAGGCAGATGAGTGGCTTTGTGTTTGTGAACAGGTTTTGGATTATTGCTGCACTTCTGTCATTGCTGTCCAGTTGTGGCAGTAGAACCACATTGACTGAGGCCATTTCTGTGAGGGTCTTCATCTGTTTCTCATGTTCTCCTGCATCTCCATGTAGATTACAGAAGGCCACACAGTTATTGAATTTATCAGTGTCTTTTCCAGAAGGACAGAACCAGGCGATCTCCACCACTCCATTCATTAGGACTTTGGATCTGCTGCTGCCTGGGCAGTTCCTGTGGAAGAATGTGTTGTGTCTGTCATTGATCAGGCTGTTAATCAGATGAGACTTGGATGAAGACACTGAGCCAAACCTGAAGAAAAACACCATTGGAGTTTTTGCCTTATAGATTGGCTGAGTTTGACTGATGGTTTCATTGTTGATGTTTCTGATCTTCCAGCTCTTGGTGATTTGTCTAAATGTCCAGAGTGGAAACTCAATCTGCTGTGTGAACGGATCAGGAACAAGCAGAGGCAGAGCATACTGACACTGGGACAGTTTAGTGACCATCATCTGCTTTAGGAAACCATCAGCACAGTGAAACACAGCCATCTGAACATCCATTGGATCGATTCGCTCAGACTGACCGGCAACCATGTTAGATAAAGACATTGCTTTGAATATATCACCACCGTGCATGGATGAGCCAGTGtctattttcttttgtttggtCTCTTTAACTTGAATGTATCTTGCTCTGTAGTCCATCATGAGTAGTTTTAGTATGAACATTTGAACCAGCTCATCTTCAGCACATGACTCAAGAGTCTGTAATGTATGTTTTGTTATCTGAAGAACATCAGCAGCTCTCAGCTGGTCATTTCTGTTTAGGTGAATTCTTtgaaacagtttttgtttttgttcagtcTTTTCCTGTTGTTTGCGTTGATCTGTTCCAATATCTGCTCCTGCAATGTTCTTGGTTTCTCTCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052436 lncRNA downstream 35342 10018357 ~ 10025630 (-) True XLOC_026130
TCONS_00052947 lncRNA downstream 46397 9984415 ~ 10014575 (-) False XLOC_026129
TCONS_00051044 lncRNA downstream 46397 9984415 ~ 10014575 (-) True XLOC_026129
TCONS_00052946 lncRNA downstream 46568 9984415 ~ 10014404 (-) False XLOC_026129
TCONS_00052945 lncRNA downstream 75347 9984415 ~ 9985625 (-) False XLOC_026129
TCONS_00052951 lncRNA upstream 117404 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00052437 lncRNA upstream 175451 10310206 ~ 10312252 (-) True XLOC_026137
TCONS_00052438 lncRNA upstream 388695 10523450 ~ 10529896 (-) False XLOC_026139
TCONS_00052439 lncRNA upstream 394585 10529340 ~ 10529896 (-) True XLOC_026139
TCONS_00052952 lncRNA upstream 549567 10684322 ~ 10711294 (-) True XLOC_026143
TCONS_00051040 mRNA downstream 321987 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051039 mRNA downstream 338369 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051038 mRNA downstream 489663 9564237 ~ 9571309 (-) True XLOC_026121
TCONS_00051036 mRNA downstream 491711 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00051048 mRNA upstream 175335 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051049 mRNA upstream 272703 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051050 mRNA upstream 401202 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA upstream 439428 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051053 mRNA upstream 457842 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051043 other downstream 146583 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051030 other downstream 1029205 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051029 other downstream 1036420 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051028 other downstream 1126496 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00050944 other downstream 3832826 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00051045 other upstream 44436 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 52278 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051047 other upstream 78343 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051051 other upstream 401719 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051071 other upstream 1223763 11358518 ~ 11362383 (-) True XLOC_026160

Expression Profile

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