RNA id: TU1988204



Basic Information


Item Value
RNA id TU1988204
length 363
lncRNA type intronic
GC content 0.35
exon number 2
gene id G1736093
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39191442 ~ 39191854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCATATATTTATATGTGTCTCGCCCTGACCTtggtattctttgttttctttattattttggttaggtcagggtgtgacatgggtgatatgtgtgtttttgtcttattctaggatgtttgtactgtctaggtttttttgtagatttatggggttgttttcatctaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatcttctttgggtatttcgtgggttattgtctatgttatgttgcacaTTAGCACATTGTTTATATAGCGGTCTCGTTCATAttattcgttttgttgtttttgttcttcGTGTTCTTCATGTTCTTcattaaataaagaagaatgtattctaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1988067 lncRNA upstream 13264 39086505 ~ 39178178 (+) False G1735986
TU1988071 lncRNA upstream 13264 39086505 ~ 39178178 (+) False G1735986
TU1988072 lncRNA upstream 13264 39086505 ~ 39178178 (+) False G1735986
TU1988129 lncRNA upstream 36920 39148396 ~ 39154522 (+) True LOC118942927
TU1988128 lncRNA upstream 37051 39148396 ~ 39154391 (+) False LOC118942927
TU1988248 lncRNA downstream 104208 39296062 ~ 39302368 (+) True G1736133
TU1988269 lncRNA downstream 148784 39340638 ~ 39362957 (+) False G1736154
TU1988270 lncRNA downstream 148784 39340638 ~ 39343652 (+) False G1736154
TU1988271 lncRNA downstream 148784 39340638 ~ 39347163 (+) True G1736154
TU1988336 lncRNA downstream 259006 39450860 ~ 39451178 (+) True G1736209
XR_005038594.1 mRNA upstream 37096 39138542 ~ 39154346 (+) False LOC118942927
XM_036957784.1 mRNA upstream 168578 39003738 ~ 39022864 (+) False zgc:92664
XM_036957789.1 mRNA downstream 36794 39228648 ~ 39237917 (+) False LOC110500362
XM_036957788.1 mRNA downstream 36797 39228651 ~ 39237917 (+) True LOC110500362
XM_021577692.2 mRNA downstream 53977 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA downstream 53977 39245831 ~ 39256014 (+) False nat16l
XM_021577691.2 mRNA downstream 53977 39245831 ~ 39256597 (+) True nat16l
TU1987950 other upstream 266514 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1109168 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1144936 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 1146376 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1428184 37760335 ~ 37763258 (+) False cited1
TU1988209 other downstream 41810 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 683902 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 870852 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1209650 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 1360157 40552011 ~ 40553853 (+) True G1737866

Expression Profile