RNA id: TU1988271


Basic Information

Item Value
RNA id TU1988271
length 2611
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G1736154
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39340638 ~ 39362957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCTAATGgcattttattttcattataaAATTACATTCACACGATTCCCTTTGATAATatgtctacgtcccaaatggtacccttctctctttacagtgcactacttgaCCAGAACCCTGGTCAAAGCAAAGATTGCacactataaaaggaatagggtgccatgacTGGACCGTAGTTCAATAGTAATTTATCACATGCCACCCACCCCTCATGCTGGATCCCAAATGAATAAAACCCTACACACACCCCTTTTGGAGTCCCTGAAAAAACGTGAATCAAAATATCTCCTCATTTCTTATTCGGCGCAGTTCCAATAATCCACACTAGCGCACTACTAATAATGAAGCAATAGTTCTGTCCCATTGACCATGCTAGTATACCACTTTGAATGGAGCAATATATTGGGCATGCATCCAAAGGCttcatcccaaacggcaccctgttcCATATTTAgggcctctggtcaaaagaacTACACTAAACAGctggtgtcccaaatggcaccctaagtGGTACGCTAGTGTGGATATCGGAATGTAGCCTATGTATTGATACTAATTAGAGTGAAGTAATGTATTGGGAATGCACACTAGCAAGTAGTACACTAGTATAAATGTTGAAACGTATCTTATTTAAATCAAAAAGCTAAAGTCAGGTAATAAGAATGCATGTCTACAGTCTGAAGCCAAACTCTCTTCTAGTTGCACTTTATTCCTATTGGTCTATTCCCTCTTGTTGCAGACACAAACATTATTACTCTTTGGAAAGTGGGTATTTGATCGGCGTAAAATGTACTACATTTAATGTGTGTGATGTTATAGGAATGGTAGGTAGCTAGGTCCATTATTTAAAAAGTCACGTGTATGTCAAAGTAGTTGGTTTGCCTTTTGTTGTACTTTGCTGCTCAAAAAcaacactctccctctctgcctatATTTTTGTGCCCTGGGTTAGTCTCATctgaatcatcatcatcactacattGCATACTATGACATTGAGCCCTTTCCACATTCATGCTAGCACAGCCACACACAGGCTAAAAGATCACATCAAACTTCCCCATAGGTTACTTGCTCGAtacgcaagagagagagagggggttgagagATGGAggaaatcgagagagagagaaaaacggtTGCGGAATAGAACACAGAAATAGAATTCTAAATTCTATGGAATTCTGGATGGAACCAGAACTTGGGAAGAATCAATCTTCAGATTGACATAAATGGGAATGATAACCCTACAACATATCCTACGGGTTCAACAGAACTCACCAATGCAGACAATCAATGTGGTCCCTTAAAAACAGCAAACGTATTATATTATTCTCATAACGTGTGGTACATATACAAAATATTGGACGACCATTAATTTAAAAGCAAATCCCTGTCCCcttcaaattgcacatcctaatCTGATAAAACGTAATCTGTTGgggaaaatgtttgtttttatttcatcACCTGctaaaaaaatgaaaagcattAAGACACATTCTGACCTGCCTCTGGAGGGAAAGTTCCAAGGTCAAATCAGAGCAGGGAccaaatactatttcaaatacTTCAAACTGAGCTTGATTGAGCGTCCTGGCAGAACGGAACCAATCCATGCAGGCTAAAGCAAAACGCTAGAAGTACATGAACAATTTCAGATAGTATTTGATCCCAAGTCTGGGTCATACAACATTAGTAGTAGCTAAATCCTTCGGCCAAAAGTGGCACCATTTTCACAGAGCTAATATAAATAGGGCGTGGATCATCATCATGATAATACACAACAATGTCAGCAATGTCTGGAATTCAGTACCCAAACGTCAACGTGTGAATTTCAATTGACACCCTATTTTTACTTAAAAAAGGTGCACTTCTTTTGTGCCCtagagtactatatagggaatagggtgccacttgagaCACACCTTAGATAAGATTCCACCCCAGCCTTTACCCAAAGTCCTCCGTCTCTTCGCCTGTCTGTTGCCTGATTAAAAAGTGCTGTGATCAGAGTACCCTGCTGTCACTACGCCAGGCCCATCTCCTCTAGAACACTTCTCGGAGACTCGTCCTACCTCCTGTAGTAGGTCGGCCTGTTCGATGGCCTTGAGAACACTCTTCTTGGACGTGTCTTGGATCTCCCCCCCCATCAGAAACTCATCCAGTATAAAGTAGGCCTTCTCAAAGTTAAAGATGATATCCAGCTCACATACGCTGCCGAAGTACTTATCCAGCAGCTCTACGAAGCGGTGGATGACCTCTAGAGTGATGAGTTCGTTGTCCTGCTCCTCCACCGCACAGCAAAAATACAGACTGGCATACCTatagagcgcacacacacacacacacacacacacaccgtattaGTGCAAACAGCATGCAGAGGCGGAATGGAAGGAAGGAACCCAGAAAACCCCCACACTGTCTTTGGGTTATTGAGGTTCAACACACCCACACCTTCTTCATTGAGGTTCAGCTCAGAACTAAAAAGGGGGAAATCCATGGAGCTCCTGCCAGTCAGTAACCCAGGGCCATGTTCTGTAGCCAAACGTAGATAGAATGCCACAAATAGAGGGCATGCTTCTTCTGCAAAGCATATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988248 lncRNA upstream 38270 39296062 ~ 39302368 (+) True G1736133
TU1988204 lncRNA upstream 148784 39191442 ~ 39191854 (+) True G1736093
TU1988129 lncRNA upstream 186116 39148396 ~ 39154522 (+) True LOC118942927
TU1988128 lncRNA upstream 186247 39148396 ~ 39154391 (+) False LOC118942927
TU1988173 lncRNA upstream 196322 39143710 ~ 39144316 (+) True G1736065
TU1988336 lncRNA downstream 103697 39450860 ~ 39451178 (+) True G1736209
TU1988509 lncRNA downstream 357445 39704608 ~ 39705136 (+) True G1736377
TU1988572 lncRNA downstream 429268 39776431 ~ 39842962 (+) True G1736434
TU1988619 lncRNA downstream 511456 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 612911 39960074 ~ 39960286 (+) True G1737283
XM_021577695.2 mRNA upstream 8730 39322865 ~ 39331908 (+) True LOC110500364
XM_021577691.2 mRNA upstream 84041 39245831 ~ 39256597 (+) True nat16l
XM_021577692.2 mRNA upstream 84624 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA upstream 84624 39245831 ~ 39256014 (+) False nat16l
XM_036957788.1 mRNA upstream 102721 39228651 ~ 39237917 (+) True LOC110500362
XM_036957793.1 mRNA downstream 72967 39420130 ~ 39453254 (+) True zanl
trnaw-cca-56 mRNA downstream 223493 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_021577706.2 mRNA downstream 248004 39595167 ~ 39600315 (+) True mpdu1b
XM_021577711.2 mRNA downstream 326809 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA downstream 326985 39674148 ~ 39706195 (+) True acox3
TU1988209 other upstream 50968 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 131153 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 415710 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1258364 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1294132 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 528593 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 715543 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1054341 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 1204848 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1645992 40993155 ~ 40997320 (+) True G1738057

Expression Profile