RNA id: TU1988336



Basic Information


Item Value
RNA id TU1988336
length 294
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1736209
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39450860 ~ 39451178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATTAACTGGAGCTAATACTATACCGTATTGTACTATACTATTCTGTACTgtatttcactgtactgtactatactgtactgtatgggactgtactgtattatactgtactgtatgggactgtactatactgtactgtatggaactgtactgtactgtattatactgtatgggactgtactatactgtactgtattatactgtatgggactgtactatactgtatgggactgtactatattatactgtatgggactgtactatactgtatgggactgtactacactgtactgta

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1988269 lncRNA upstream 87903 39340638 ~ 39362957 (+) False G1736154
TU1988271 lncRNA upstream 103697 39340638 ~ 39347163 (+) True G1736154
TU1988270 lncRNA upstream 107208 39340638 ~ 39343652 (+) False G1736154
TU1988248 lncRNA upstream 148492 39296062 ~ 39302368 (+) True G1736133
TU1988204 lncRNA upstream 259006 39191442 ~ 39191854 (+) True G1736093
TU1988509 lncRNA downstream 253430 39704608 ~ 39705136 (+) True G1736377
TU1988572 lncRNA downstream 325253 39776431 ~ 39842962 (+) True G1736434
TU1988619 lncRNA downstream 407441 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 508896 39960074 ~ 39960286 (+) True G1737283
TU1989599 lncRNA downstream 527558 39978736 ~ 39986609 (+) True G1737306
XM_021577695.2 mRNA upstream 118952 39322865 ~ 39331908 (+) True LOC110500364
XM_021577691.2 mRNA upstream 194263 39245831 ~ 39256597 (+) True nat16l
XM_021577692.2 mRNA upstream 194846 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA upstream 194846 39245831 ~ 39256014 (+) False nat16l
XM_036957788.1 mRNA upstream 212943 39228651 ~ 39237917 (+) True LOC110500362
trnaw-cca-56 mRNA downstream 119478 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_021577706.2 mRNA downstream 143989 39595167 ~ 39600315 (+) True mpdu1b
XM_021577711.2 mRNA downstream 222794 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA downstream 222970 39674148 ~ 39706195 (+) True acox3
XM_021577725.2 mRNA downstream 377144 39828322 ~ 39856505 (+) False LOC110500384
TU1988209 other upstream 161190 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 241375 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 525932 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1368586 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1404354 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 424578 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 611528 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 950326 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 1100833 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1541977 40993155 ~ 40997320 (+) True G1738057

Expression Profile