RNA id: TCONS_00052950


Basic Information

Item Value
RNA id TCONS_00052950
length 2272
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_026132
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10062188 ~ 10137141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATAAGTTGTTGAATGCAGCTGTTATTGTAGCCcatctttaaaatgttaaatgactCTATAATGTTGTCTGTCTGCTGAGCAAGATCGGTGATTAATGATCTTATTTGGGATTGATCCTCTCTTGATAGACTGTAGCCAAGCTTCTCTCTAGCATATGAAAATGGATTTGTAAAAGCTTCTGTTAATCCACTGGGTTTTTTAATCTTTACATAATCATCATAGCTCTGCACTATAAAAATATTCCTGTTCTCCTTCCAGTTGTCAACAGAAACGCTTCCATAATTATCATGGAGTAGCTTTCTCACATCTCTCATTATAtcaatatcttttattttaggagTGTCTTTGATGGTGTTTTTCACAGTTTGTTGCCAAAACGCATCAAACTCTTTCTTCAGTGTTTCTTCATCTTTTGCTTTGTCTTTGAGTTTTAAGGCAAGTTCTTTGCTCTTTTCATAGAGAGTGTTTTCGTGATGTGTCCTCTGAGCATCAATCTTTTTCTTCAGGCCTCGCTGCTGGAGAATGTCATTAAGCTTCCTCTTTGTTTCTCTGACAATGTTTTCCTGAAGCTCCTTGATTTTGATCACAAAAGATGTTTTCCACTGAATCAGTATTTCTACATCAGTGTCTTTCTCAAAGAATTCTGACATTGAATTTTTTACTTCTTCACTCCTCTTTTTTAGTTCAAATTGAAGATGGGTTTCTTCAACCTCATGAATGTTCTCATTTTCTATTAGGTTGTGCAGTTTGTTTTCAGTTTCTAGCATAACACTGCGGAGCGTCCAGGACCACTTGCTATATTTCGTTTCCAGTTTCCTGTAGGCTGAAATCTCCAGTGAATTTCTAAAGCTAAAGACAAATCGTTCATTCAGTAAAGCCTCCCAGAGATCGTTAATACGTTCTTTTATGTCATCAAGCTTTATTCCTTGTGATTTGGAGGCATGTGAAATAATGGATTTCTTGAGCTCTTGTACATTCTCACAGTAGTTTGGGTTTGGGGGTGCCATTGGTGGACTGCCCTCCCAGAGCTGAGCAAAATACTTTATGTCATTCTGAACATCAAATTTGATTACATCACTGAACCTTTCTGCATCACAGACTTCATCTTTAGCAGCAAGCTTTGTCATTTCATCCAGTGTCTCCTGTAGTTTTCTCCTTCCCTCCATGTTTTTCTCTCCAGCTGTGATGTCTGACACGTTctgatgcacaaacacacagctgGGATACAATCTGACCTTCTTCATCCTCATGAAGGCCTGAACAACGATCTGAAGAGTGTCCTGCATCTCAGAGGGGTTTTCTCCAAAGATGTTGATCAAGGTCAGATTTCCAAGACCTATAACAAATGTGGCCAGTTCATTGTCATGACCTCTTGTTGATTTTCCAGCCAGTTCTAGAGAACGAAGACCTTCAGTATCAACAACCAGAATATAGTCAAAGTTCATCTCAGTTTTCATTTCGTCAGACACTTTGACCAGCTGCATGAAAGCTCCTCTGGTGCATCTGCCAGCACTGACAGCAAACTGGAGCCCAAACATGGCATTCAGCATGGTGGATTTCCCAGAGCTTTGAATCCCTAAAACTGACAACACAAAGACTTTCTGGTCTTTCAGTTGCTGGACAAGCTGATCCAGTACAGCAGAGACCCAGACTACAGGAACATGAGCAGCATCTCCATCCATCAGCTCCAGTGGAAACCCAGAGATCATCATCTCTGCTGCAAGACTTGGGAGAGGAGAGGGTTCAACTTGCAAGTTTTTGTTGATCTCCTTCACAGATGAACATGATTCATAGATCTGACTGATCTCCCGCATGATGTGCTCCAGACCAAATGTTGCAGCTTGAAGATCCTCAGATATTTTCTCAAGTTCTGCTTGTTTAGCTTTGAGTTCAggtttattgttgttgttcttgtgTTCTTTCATTTCTACAATCATTGACCAAGTTTTATTATACATGTTATGTAGGTCAGAAAGGTTATCTGAGATATGTTCATCCAGGAGGGTTGTGAGCCATTTGAGGAAAAAAACATTCTCATGTTTGTCATATGGATCCATTGTTTTAATAAAGTGCTTCATGAACTCACTGATGTCAGATTCATGCTGCTGTTTACGAATGTtcatcatttctgtttttttgtcaCTTACTATCTTGTCTGGTTCATCTCCTTGAGGTCGGTGTAGTTCTTTGTTCTTCTGACACCACTGATGCCACAGTTTCCCCTGATGAGGCAGAAATGATTCTTTGATTTCTGTCAGTTTTTTATTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052436 lncRNA downstream 36558 10018357 ~ 10025630 (-) True XLOC_026130
TCONS_00052947 lncRNA downstream 47613 9984415 ~ 10014575 (-) False XLOC_026129
TCONS_00051044 lncRNA downstream 47613 9984415 ~ 10014575 (-) True XLOC_026129
TCONS_00052946 lncRNA downstream 47784 9984415 ~ 10014404 (-) False XLOC_026129
TCONS_00052945 lncRNA downstream 76563 9984415 ~ 9985625 (-) False XLOC_026129
TCONS_00052951 lncRNA upstream 115018 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00052437 lncRNA upstream 173065 10310206 ~ 10312252 (-) True XLOC_026137
TCONS_00052438 lncRNA upstream 386309 10523450 ~ 10529896 (-) False XLOC_026139
TCONS_00052439 lncRNA upstream 392199 10529340 ~ 10529896 (-) True XLOC_026139
TCONS_00052952 lncRNA upstream 547181 10684322 ~ 10711294 (-) True XLOC_026143
TCONS_00051040 mRNA downstream 323203 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051039 mRNA downstream 339585 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051038 mRNA downstream 490879 9564237 ~ 9571309 (-) True XLOC_026121
TCONS_00051036 mRNA downstream 492927 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00051048 mRNA upstream 172949 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051049 mRNA upstream 270317 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051050 mRNA upstream 398816 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA upstream 437042 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051053 mRNA upstream 455456 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051043 other downstream 147799 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051030 other downstream 1030421 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051029 other downstream 1037636 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051028 other downstream 1127712 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00050944 other downstream 3834042 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00051045 other upstream 42050 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 49892 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051047 other upstream 75957 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051051 other upstream 399333 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051071 other upstream 1221377 11358518 ~ 11362383 (-) True XLOC_026160

Expression Profile

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