RNA id: TU1989666


Basic Information

Item Value
RNA id TU1989666
length 379
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1737370
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40077633 ~ 40078011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagctcttgcagcatgaactgacatgttgacCAATCAAAGGACCAGATAataaatctagtactgaaagcaagagagagctagctatatttcagatttttttcactttcacttacttagctagcaaatgcagctagctagtttatccTATTCAAACACCCGGCTTAAAcatagagggatgctatgttagctagctggctatgactatccaacactggtactcttccaagtcaaggtaagcttttggttttataaatgtattgccaccggggtCCACcgatgtaactgctaaactgcttgcagACTGTACACTGTATGTGTGTCACGTCTACTCTCGCTCCTCCCCTCTGGCGTTCGACGTCGCCTGTATACTAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989647 lncRNA upstream 15729 40061664 ~ 40061904 (+) True G1737351
TU1989641 lncRNA upstream 24610 40052766 ~ 40053023 (+) True G1737345
TU1989640 lncRNA upstream 25867 40051449 ~ 40051766 (+) True G1737344
TU1989605 lncRNA upstream 77871 39999415 ~ 39999762 (+) True G1737310
TU1989599 lncRNA upstream 91024 39978736 ~ 39986609 (+) True G1737306
TU1989668 lncRNA downstream 1335 40079346 ~ 40079585 (+) True G1737372
TU1989614 lncRNA downstream 24570 40102581 ~ 40102871 (+) True G1737318
TU1989682 lncRNA downstream 29060 40107071 ~ 40107333 (+) True G1737385
TU1989688 lncRNA downstream 34081 40112092 ~ 40112291 (+) True G1737391
TU1989611 lncRNA downstream 35082 40113093 ~ 40116155 (+) False LOC110500396
XM_021576742.2 mRNA upstream 16935 40053881 ~ 40060698 (+) False tmm85
NM_001160551.1 mRNA upstream 16946 40054100 ~ 40060687 (+) True tmm85
XM_021577744.2 mRNA upstream 26988 40002898 ~ 40050645 (+) True LOC110500394
XM_036957810.1 mRNA upstream 79692 39972320 ~ 39997941 (+) True LOC110500393
XR_005038599.1 mRNA upstream 82080 39972319 ~ 39995553 (+) False LOC110500393
XM_021577746.2 mRNA downstream 8175 40086186 ~ 40102011 (+) True LOC110500395
XM_021577747.2 mRNA downstream 34965 40112976 ~ 40116166 (+) False LOC110500396
XM_021577748.2 mRNA downstream 40280 40118291 ~ 40131867 (+) False LOC110500397
XM_021577749.2 mRNA downstream 40280 40118291 ~ 40131867 (+) False LOC110500397
XM_036957812.1 mRNA downstream 59615 40137626 ~ 40158575 (+) False LOC110500398
TU1989649 other upstream 14308 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 200683 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 787963 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 868148 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1152705 38867967 ~ 38924928 (+) True arrb2b
TU1989857 other downstream 323493 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 474000 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 915144 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 946699 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1810800 41888811 ~ 41891367 (+) False G1739103

Expression Profile