RNA id: TCONS_00051048


Basic Information

Item Value
RNA id TCONS_00051048
length 2143
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_026137
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10310090 ~ 10312252 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGGGCTCCTTCAATCGTGATGCTTTCTCACGATTCCCACGCATTTACCACACCTCGACATCAGATATGCACGGAATTACGCACGGATAAATCCCGCGTTTAATCTCCGATCTCGCTTTTGGATGAAGATTTCAAAAGGATGGATTTCCCGCGGTGTTTGCTGTCCGCGTACTTGCTGCTGCTCTCCTTCGCACAGTGCCAGCACTATTACCTGCTCAGACCCATCCCGAGTGACACTTTACCCCTGCTGGAGCTGAAGGAGGACCCGGACCCGCTCTACGATCCGCGGGAGAAGGATCTAAACGAGACCGAGCTGAGGAGCGCGCTCGGGGACTTTGACAGCCGCTTTCTGTCGGTCGGTCCTCCTCAGGACCGCTACGCGGGGAACGAGGACCTGGACGAGCAGGAGCTCCAGCTGAACCTCGCCGGGATGATGCCCAAAGACATCAAGAACCTGGACTTTGACGCGCCGTGGGGCAAAAAGCGCAAAGCCAGCAAGAAGCTGAAGCGGCGGCTGCAGATGTGGCTGTGGTCCTACTCGTTCTGCCCGGTGCTGTACGCCTGGAATGACCTGGGCTCGCGCTTTTGGCCGCGGTTCGTGCGCGCGGGGAGCTGCTACACCAAGCGCTCATGCTCGGTGCCGGAGGGCATGGTGTGCAAACCGGCCAAATCAACACACATCACGCTGCTGCGCTGGAGATGCGTGGCGAGGAGAGGCGCACTCAAGTGCGCGTGGATACCGGTGCAGTATCCCATCATCACAGAGTGCAAATGCTCATGCGCGAACTGACCAgcagaaataaaaaacattataatattgAACTCCTGATGCGTTTCTGGACTCTGATGTGAAGCGTATTAATGCATATCGCTGGACTTAAATTATGGAGACATGACTGTACAAAATGTATCTCATATTTGTAAAATCCACATTGCTGGAAGAACTTTCTAAAGAAGAGAATTCAGACATGAACATCTTTTATAAAACAAATCTCTGGATTTAAGTTATGAacacttttattttgtgttttggaaACACTTTATATTAACTTTAAGTCATTTAAAGAGATTAAagattttaattttgttgttttaaacaggtttgagtttcttctgttgagcacaaaagaagataatttgagaAATGTTGATAGCTGGcacccattcacttccatagtatttattttttacaatggaagtaaaTGGGTGAACTGGCCGCTCATTCAGAAAACCCATAATAGAGCTCCTGATATGGTTCTGGACTCTGATGTGAAGCACATTAATGCATGTTGCTGGACTTAAATTATGGAGACACGACTGTACAAAATATATCTCATATTTAAAATTCACATTTCTGGAAGAACTTTATAAAAAAAGAGAACATTATTTATACAAATCTCTGGATTTGTTAAGAAAagcttttattttgtgttttggaaacactttatattaattttagatcatttaaacattattttcagacatatttaaattctgtcattgtttacttgcTAAAAACCCGTTGGAGTTTTATCTGttaaacccaaaagaagataattcGAAGAATGCTGGTGATCGGctcctattgacttccatactattttttttttatcgaagTGCcagcagcattcttcaaaatatcttcttttggtgTTCAACATAagaccacatgagggagagtaaataataagGCAATGTTCATCTAAACACAATGCTGTGCAGATCAATAGCTCACACATTCAGATTTGATAACTGATGACTCAGCGTTGTGTTTTATATTAATATCTGTCATGCAAGTGTTCCCTTTCGTTTGTGTATGCACTATCATGTGTAGGAATGTATTGTCTGTATATGTCGTGCCATCATGTAATGATCTAGCCAGTATTATGTGTAGTAATATCCAGAGTCTACTGTAATTGTGGAAAATATTgggttgtatttatattgcagaGAATGGAGCTGTCTGAGATGTCTATAAGGTTTTTTTTCCCACACAGATTCGACGACCTCAAAATTTATTgtggatttttaatttttttttaaagtctcacATGCTGTGACGGCCGGAGACGATTTATCCTGTAAATTAAGATGAACTgttatttattctttatattcagataataaaatatcaaacacAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-991206-8 Acts upstream of or within dorsal/ventral pattern formation; negative regulation of BMP signaling pathway; and negative regulation of endodermal cell fate specification. Located in Golgi apparatus and synapse. Is expressed in several structures, including central nervous system; mesoderm; neural tube; optic vesicle; and presumptive shield. Human ortholog(s) of this gene implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Orthologous to human NOG (noggin).

Ensembl:

ensembl_id ENSDART00000081766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052950 lncRNA downstream 172949 10062188 ~ 10137141 (-) True XLOC_026132
TCONS_00052949 lncRNA downstream 173247 10062188 ~ 10136843 (-) False XLOC_026132
TCONS_00052948 lncRNA downstream 175335 10060972 ~ 10134755 (-) True XLOC_026131
TCONS_00052436 lncRNA downstream 284460 10018357 ~ 10025630 (-) True XLOC_026130
TCONS_00052947 lncRNA downstream 295515 9984415 ~ 10014575 (-) False XLOC_026129
TCONS_00052438 lncRNA upstream 211218 10523450 ~ 10529896 (-) False XLOC_026139
TCONS_00052439 lncRNA upstream 217108 10529340 ~ 10529896 (-) True XLOC_026139
TCONS_00052952 lncRNA upstream 372090 10684322 ~ 10711294 (-) True XLOC_026143
TCONS_00052441 lncRNA upstream 380176 10692408 ~ 10693768 (-) False XLOC_026144
TCONS_00052440 lncRNA upstream 380176 10692408 ~ 10693768 (-) True XLOC_026144
TCONS_00051040 mRNA downstream 571105 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051039 mRNA downstream 587487 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051038 mRNA downstream 738781 9564237 ~ 9571309 (-) True XLOC_026121
TCONS_00051036 mRNA downstream 740829 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00051037 mRNA downstream 740829 9542579 ~ 9569261 (-) False XLOC_026121
TCONS_00051049 mRNA upstream 95226 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051050 mRNA upstream 223725 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA upstream 261951 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051053 mRNA upstream 280365 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051054 mRNA upstream 280365 10592597 ~ 10634532 (-) False XLOC_026141
TCONS_00051047 other downstream 96870 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 122939 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051045 other downstream 123737 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051043 other downstream 395701 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051030 other downstream 1278323 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051051 other upstream 224242 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051071 other upstream 1046286 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051073 other upstream 1085037 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051092 other upstream 2613370 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 2633412 12945644 ~ 12970428 (-) True XLOC_026180

Expression Profile

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