RNA id: TU1990244


Basic Information

Item Value
RNA id TU1990244
length 1815
RNA type TUCP
GC content 0.51
exon number 2
gene id G1737866
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40552011 ~ 40553853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGTTGTGTATAGCGTGAGTCCAGAGGAGCTGAGCGATGTCGTGTGTCCAGgctgccctcccctctccactctgaCACTGCAGGGTCAGGCAGTCCCGGATACGAGGGGCCTGACGCACCCACACCTCGAACCTCACCCCCTCCTCACCCACACTCTGGGTCAGACCCATCTCACCCGtctgacagagagggaggggggaggggagggggagaaagagagatgtggagagaatAGAGGTCGGAACCGTACACATAGTGGATTCATGTGGTATTGGACCTTCGTCTCATAGCCCCGCTGTTTTGGAAATGACGGATTTTGGGCCCAATTTTTCTGATTGAGGCCATATGTGTGAGTTTGCGGGCATGCCCGCGCGCGTATGCGTGGTTGCGCATGCTGGTGTGTGCGTATTTACGCACGTCTGTGTGTGCACCCGTGTATGAGTGTGCGCGTGTCCGTTACCTTGATGCTGTGTTTGAAGCTGTAGGCGGTGCGTCCTGGGCCGGGACTCTTCTGCTTGGTGAAGATGATGAGGTGCTGATAGAGGAACACACTCCTCACCCCTGTCTTCTTCCTCCTGGTCCCCCCACACACCAACAGCTCCCCCTGACGCACCAGCTCTCCGCGCTCCGCCACTGggacctaacacacacacacacacacacacacacacacagtttaccgcCCACCAAACCGCGTTGTGTTGTTCAAGAGAGGCTTTTGAAACAAGCTATTTTTAACCATCCAAGTGATGTGAGGTTCATGTAACCCGAGCTATGCGTCAAACCTAACTCCTCCACCACTCTCTGTTCTGTTATTTAGCTAACTTTCAGAgagctctttgtgtgtgtgtgtgggtcatgtgtttttgcctgtgtgtgtttgtgggtgtgttcTAGTAGCTATGTGGGAGGGTTTAACCTAGCTATATAATCCACTCTGTAGGTGACTCAGCAAAGCAGTATGTCATCAGTCAGACtgacagtgagtgtgtgtttgtgtatgtgtgtgtttgcatgcgcgtgtgtttctctctcgctccctgcgtgtgtgtgcgcatgtatgtttgtgttgtgtatgagtatgtgtgtatgagtatgtgtgtcacCATGGTGATTGATAGAACTGTGTCATAGAAGCAACAGAACTACAGGACAGGAAGCAGAAAACAGGAGTAGGATTGGCTTATAAAAATAGGATGAAACAAGTTGCATCTAGGTGCTGATCTACGGTCAGTTTTGGCTTAACCCCCCAAATGGCTATGGTTAGAGCTGACGTAGGGAAAGTTGATTCTAGATCTGTGGTTATGGACAAATTGAGTTATTCAAGTGAATGTGATGTGATGCTTATTGAACTGTTTGTCCCGACGAAGTCCCAAATTGCATTATATTCCCttcacagtgcactactgttgaccagagccccatgggcgCTGattaaaagaagtgcactatgggctctggtcaaaagggtGCTATTTAGGACGCATTCCCAATTTAAGGTTGAAACCTTGTCCAACACTTTGGGATCATTATACCAGTATGGGGGTTTATCTATTTTAATTTGGCTTCCGCCCAGAGTTGAGAATTTAGTTTTAAGTCTGGCGTTCTCACCGGACACCCGACGATTAGGTCGCTGGCCCGGAGGTCCTCGCCGTGACGCTGGACGTGTCTGAGGACGGAGAGGGAGGAGTCGGAGGCAGGGTTTAGCCCTCCCAGCTCTTCCAAGGCATCGCAGTACTGTTCCAGTCTCAGTGTAGGGGCCTGGAGACAATGGGGGAacgacaggggggagagaggaggggtggccGGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990243 lncRNA upstream 1391 40548194 ~ 40550620 (+) True G1737865
TU1990215 lncRNA upstream 31167 40515981 ~ 40520844 (+) False G1737845
TU1990216 lncRNA upstream 31167 40515981 ~ 40520844 (+) False G1737845
TU1990217 lncRNA upstream 31167 40515981 ~ 40520844 (+) False G1737845
TU1990218 lncRNA upstream 31167 40515981 ~ 40520844 (+) False G1737845
TU1990285 lncRNA downstream 58246 40612099 ~ 40675623 (+) True G1737905
TU1990304 lncRNA downstream 100927 40654780 ~ 40682814 (+) True G1737923
TU1990330 lncRNA downstream 131767 40685620 ~ 40685833 (+) True G1737936
TU1990317 lncRNA downstream 142706 40696559 ~ 40805544 (+) True G1737928
TU1990308 lncRNA downstream 210440 40764293 ~ 40766271 (+) False G1737927
XR_002470100.2 mRNA upstream 147171 40401452 ~ 40404840 (+) False LOC110500409
XM_021577764.2 mRNA upstream 199122 40322170 ~ 40352889 (+) False LOC110500405
XM_021577765.2 mRNA upstream 199122 40322172 ~ 40352889 (+) True LOC110500405
XR_005038601.1 mRNA upstream 294966 40255990 ~ 40257045 (+) True LOC118942929
XM_021577756.2 mRNA upstream 357537 40166103 ~ 40194474 (+) False LOC110500400
XR_002470101.2 mRNA downstream 240596 40794449 ~ 40837182 (+) True LOC110500418
XM_021577792.2 mRNA downstream 293139 40846992 ~ 40855143 (+) False LOC110500419
XM_021577798.2 mRNA downstream 496336 41050189 ~ 41058764 (+) True LOC110500424
XM_021577800.2 mRNA downstream 554593 41108446 ~ 41125926 (+) False LOC110500425
XM_021577799.2 mRNA downstream 554593 41108446 ~ 41125934 (+) False LOC110500425
TU1989857 other upstream 148326 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 488686 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 675061 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 1262341 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 1342526 39179287 ~ 39209485 (+) True nat16
TU1990461 other downstream 439302 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 470857 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1334958 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 1341476 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1731203 42285056 ~ 42288500 (+) True cxcl8c

Expression Profile