RNA id: TCONS_00052439


Basic Information

Item Value
RNA id TCONS_00052439
length 420
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_026139
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10523450 ~ 10529896 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATGTAAAGGTTACACTTTATCGTGCTGTACACgctaattgtttattcatttaattccAGCAGTCGTTTGGATGCGTTTCCCTCCTCAGCCACTGGAGGCCGCTCTTTCCTCAGGAATTACACTTCAGATTTCTCACGTATTCCTGAACGAGCCAATTATCGACCAACTAAATCCTCGACGAAGCCTGCTCGTTGCCTATACATTATTTAGTCGAGAAACTGCTCAACAGGAGAAGCTACCGAGAAGACAATCCCACTGGACAAACCTTAAAGATTCTCCTGAAGAAAAGCTGGAAAAATAGACTCCACCGTTTCCCTTTAAACTCCTGGTCGAACATCAGGAACTTTTTGAAGCTACATAAACAACATTTTCGGAAAAGAGGTATATCTGTGTACACAACAGTAATACAAATGCAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052951 lncRNA downstream 135512 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00052437 lncRNA downstream 217088 10310206 ~ 10312252 (-) True XLOC_026137
TCONS_00052950 lncRNA downstream 392199 10062188 ~ 10137141 (-) True XLOC_026132
TCONS_00052949 lncRNA downstream 392497 10062188 ~ 10136843 (-) False XLOC_026132
TCONS_00052948 lncRNA downstream 394585 10060972 ~ 10134755 (-) True XLOC_026131
TCONS_00052952 lncRNA upstream 154426 10684322 ~ 10711294 (-) True XLOC_026143
TCONS_00052441 lncRNA upstream 162512 10692408 ~ 10693768 (-) False XLOC_026144
TCONS_00052440 lncRNA upstream 162512 10692408 ~ 10693768 (-) True XLOC_026144
TCONS_00052953 lncRNA upstream 413168 10943064 ~ 10944756 (-) False XLOC_026150
TCONS_00052954 lncRNA upstream 413168 10943064 ~ 10994065 (-) False XLOC_026150
TCONS_00051049 mRNA downstream 104027 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051048 mRNA downstream 217108 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051040 mRNA downstream 790355 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051039 mRNA downstream 806737 9634777 ~ 9722603 (-) True XLOC_026122
TCONS_00051038 mRNA downstream 958031 9564237 ~ 9571309 (-) True XLOC_026121
TCONS_00051050 mRNA upstream 6061 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA upstream 44287 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051053 mRNA upstream 62701 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051054 mRNA upstream 62701 10592597 ~ 10634532 (-) False XLOC_026141
TCONS_00051055 mRNA upstream 62702 10592598 ~ 10612186 (-) False XLOC_026141
TCONS_00051047 other downstream 316120 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 342189 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051045 other downstream 342987 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051043 other downstream 614951 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051030 other downstream 1497573 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051051 other upstream 6578 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051071 other upstream 828622 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051073 other upstream 867373 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051092 other upstream 2395706 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 2415748 12945644 ~ 12970428 (-) True XLOC_026180

Expression Profile

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