RNA id: TU1990314


Basic Information

Item Value
RNA id TU1990314
length 1950
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1737927
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40764293 ~ 40792490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagcatctgctaaattactaaaatgtaaaatcaGTGTGAACGGTCAGGCTTCTAGGTTTAGGGTGTAGTAGTTGGCTATTCCCTATTGGGAGTGAAGGGGCTGGTTCATTGTCAGATCATAAGAAGGTCCAATGGGACATGGGGTGGACTCTcctttcctcacctctcctcttaaATTGTGCTTAGAAGGTATGAGAGctttcaaatacacacacacacacttgcacataaACACAgtcagaaacaaacacacacacacaacctaaaaATTGCCTTGTTCACGTACACTATCCAAGTACCTTCCACTGCATGACAGAATTACAGATAGCATTAATTCCCGCTCACATCTTCTGGAACAAAAAGCACCCTCATAGCTCCAAATTCAGACATGCTATTGGTTCTCGGCTGTCAATCTGACACACAGACATGCTATTGGTGCTTTCAGCTGTCAGTCATGATCAGTGCATCACTCTAGGGCTATGCAATGCCTACATCTAGTGATCACAAAACATGTATAGTATGCTTGTCCAAGAAGGTATTAGCTAGCTTATCCCTTTGATAAAGACTCAAGTATGTTAGTAGTGTATGTATGCAGGTAAATGTATGTCATCATAAACCCCATAGCACAGTGACCCCCGAAGATGTTATTTTTTACAGGGGCAGCCATAGTGGTACAGTGCCCCTGAAGCAAATTAGGGGTTAAGTGCCttcctcaagggcacatcaacagatttttcaccttattGATGGTCAAGTCTGGAACTGCCATCAGCATTGGACGCACTGATTTACAGTTACTGATTTAATGGCATAGTTCACTCACTCATACAATGTCACTCTTCATCAGCCATCCCCATCTTCATTATCATCCTCTGCTATTCCTCATCAGCtacatcacaaacacacatgtaCCAACAAACTCATCTTCACATATAAAAGAAAAAGGAAACATCTATTTTCACATGAGCTGAAATCAGATACACTTTTAAACAGGGCCAATGGAAGAAAGTATCTACCTGGCAACAGCGAGGAGGAAGTAGATTCTCACTGGCCGTTGCTATGGTTAAGGATCAAGTGACCAATGAGAAACTTCAACCCTTCACTGAGGCAGGTCACAAAAAGAAAAAATGAAAAAGACCAAACATGTTTTATTAAAAGAGTTGACAGACACACATTTTCATTTGAAGTATTTCTGCTGTAGTCTTTTTCCCCCTTGTATTTCATACTTCAAAAATAAagatcattttttaaataatattactatGACATTATTGTCATTGTCATGATTAATAGTGTTAATATCATCATAATCTTTCTCATCATCATAATTATTTCTACTGGTGAACACTACGGTGAGATCACTACAGGCCACTTCCACTCTCTAGGTTAATAGGCTCTATTGGCTAACAGATGTTCtgatagagggggagaaaggactgcCGACGCCCCTAAAACACACGTTCCTTGCTACCCTTTTCCTTATATTCCCTCCCTTGTTCCTAAAAACTTCCTTTCTTCCATTCCCGTTTTTCGTTTATCCATTCCCTTTACCCTTCGCTGTCTGGGTGAAGAGATTAATAGATGACAGTGTTTAAGTAACTGTCTTtcattctccctctctctctctctctctttttccctctacttctatctttctctctcctctctttactagCTTTGTCTGTTTTTCTTTGTTGttttccattctgtctctctcaccccctgtcttcacctttctctgtctcttgtcAATCTCTTTCTATCACACTGCCCCTACTATTCACATCTCGCTCAATCTTTATTCCGTTTCTCTCTCATTCAttcactccctctcttttccttttcatctctctcagactatctctctccatccaacaACAAGCCTCCAGTGAAAAGGGAAACAGGGTAAACAACCATGTTGGCAGGAGCTCCCCTCTCTCAtttggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990330 lncRNA upstream 78460 40685620 ~ 40685833 (+) True G1737936
TU1990304 lncRNA upstream 81479 40654780 ~ 40682814 (+) True G1737923
TU1990285 lncRNA upstream 88670 40612099 ~ 40675623 (+) True G1737905
TU1990243 lncRNA upstream 213673 40548194 ~ 40550620 (+) True G1737865
TU1990221 lncRNA upstream 243449 40515981 ~ 40520844 (+) True G1737845
TU1990438 lncRNA downstream 75288 40854333 ~ 40854854 (+) True LOC110500419
TU1990437 lncRNA downstream 77545 40856590 ~ 40856726 (+) True G1738034
TU1990450 lncRNA downstream 129178 40908223 ~ 40908672 (+) True G1738047
TU1990451 lncRNA downstream 129696 40908741 ~ 40909526 (+) True G1738048
TU1990452 lncRNA downstream 130796 40909841 ~ 40910518 (+) True G1738049
XR_002470100.2 mRNA upstream 359453 40401452 ~ 40404840 (+) False LOC110500409
XM_021577764.2 mRNA upstream 411404 40322170 ~ 40352889 (+) False LOC110500405
XM_021577765.2 mRNA upstream 411404 40322172 ~ 40352889 (+) True LOC110500405
XR_005038601.1 mRNA upstream 507248 40255990 ~ 40257045 (+) True LOC118942929
XM_036957813.1 mRNA upstream 569819 40166131 ~ 40194474 (+) True LOC110500400
XR_002470101.2 mRNA downstream 15404 40794449 ~ 40837182 (+) True LOC110500418
XM_021577792.2 mRNA downstream 67947 40846992 ~ 40855143 (+) False LOC110500419
XM_021577798.2 mRNA downstream 271144 41050189 ~ 41058764 (+) True LOC110500424
XM_021577800.2 mRNA downstream 329401 41108446 ~ 41125926 (+) False LOC110500425
XM_021577799.2 mRNA downstream 329401 41108446 ~ 41125934 (+) False LOC110500425
TU1990244 other upstream 210440 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 360608 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 700968 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 887343 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 1474623 39233664 ~ 39289670 (+) True G1736098
TU1990461 other downstream 214110 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 245665 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1109766 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 1116284 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1506011 42285056 ~ 42288500 (+) True cxcl8c

Expression Profile