RNA id: TCONS_00051053


Basic Information

Item Value
RNA id TCONS_00051053
length 1315
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_026141
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10592597 ~ 10634532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGCAGCTCCACCCGGCCCAGAGCCAGCACATCACCACCATGAGCAGCATGCAAGtttaaaccATGTGTTCGTTGTTCTTCTCGCCACCAGGGTTTCAGATAAACCTGTCTGGACTTCCTCCAAGTAAACGTAAAGCCCTGAAGTTAAATTTTGCCAATCCTCCAATCAAAACCACTTCCAGAATCACTTCCGGACTTCCTTTCCAGAACCCACACATAGAGCGGCTGCGAACACACAGTATCGAGTCGTCTGGGAAGCTGAAGATCTCAGCGGAGCAGCACTGCGATTTCACAGCAGAAGACCTGAAGGATCTCGGCGAGATCGGCAGAGGAGCGTATGGCTCGGTCAACAAGATGGCGCACAAACCCAGTGGACAAATCATGGCCGTCAAGAGGATTCGTTCAACAGTAGACGAGCGAGAACAGAAGCAGCTGCTGATGGATCTGGATGTGGTCATGAGGAGCAGCGACTGTCCGTACATCGTCCAGTTTTACGGGGCTCTTTTCAGAGAGGGGGATTGCTGGATATGCATGGAGCTCATGTCTACCTCCTTCGACAAATtctacaaatatgtttattcctCTTTAGACGAAGTGATTCCAGAGGAGATTTTAGGGAAAATAACATTAGCTACTGTGAAAGCACTTAACCACTTAAAAGAAAACTTGAAAATTATTCACAGAGACATAAAGCCATCAAATATCCTCCTGGACAGGAAAGGCAACATTAAACTGTGTGATTTTGGCATCAGTGGGCAGCTGGTTGACTCCATCGCCAAAACCAGAGACGCAGGCTGCAGACCGTATATGGCAccgGAGAGGATAGACCCCAGCGCCTCCAGACAGGGTTATGACGTGCGCTCGGATGTGTGGAGTTTGGGCATCACACTGTATGAGCTGGCCACGGGACGCTTCCCCTACCCCAAGTGGAACAGTGTGTTTGACCAGCTGACGCAGGTGGTGAAGGGCGACCCACCACAGCTCAGCAGCTCCGAGGAGAGACAGTTCTCCCCCAAGTTCATCAACTTCGTCAACCTGTGCCTTACAAAGGACGAGTCAAAAAGGCCAAAGTACAAAGAGCTTCTGAAACATGCGTTCATCCAGATGTACGAGGAGCGCTCGGTGGACGTGGCCACTTACGTCTGCAGGATCCTGGATCAGATGCCACCGTCTCCCAGCTCCCCGATGTACGtggactgacacacacacacacacataaacacacgcacacacacacatctgaacgTCCACACGCTGTCTACAGATCTGCTTCATCACACAACTGCAGTATTAAACCAGGAAATGAGCATCTGA

Function

GO:

id name namespace
GO:0007254 JNK cascade biological_process
GO:0007257 activation of JUN kinase activity biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000187 activation of MAPK activity biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0008545 JUN kinase kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004708 MAP kinase kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-98 Predicted to enable JUN kinase kinase activity. Involved in JNK cascade. Acts upstream of or within determination of dorsal identity. Human ortholog(s) of this gene implicated in ovarian serous carcinoma; pancreatic cancer; and urinary bladder cancer. Orthologous to human MAP2K4 (mitogen-activated protein kinase kinase 4).

Ensembl:

ensembl_id ENSDART00000093037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052438 lncRNA downstream 62701 10523450 ~ 10529896 (-) False XLOC_026139
TCONS_00052439 lncRNA downstream 62701 10529340 ~ 10529896 (-) True XLOC_026139
TCONS_00052951 lncRNA downstream 198769 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00052437 lncRNA downstream 280345 10310206 ~ 10312252 (-) True XLOC_026137
TCONS_00052950 lncRNA downstream 455456 10062188 ~ 10137141 (-) True XLOC_026132
TCONS_00052952 lncRNA upstream 49884 10684322 ~ 10711294 (-) True XLOC_026143
TCONS_00052441 lncRNA upstream 57970 10692408 ~ 10693768 (-) False XLOC_026144
TCONS_00052440 lncRNA upstream 57970 10692408 ~ 10693768 (-) True XLOC_026144
TCONS_00052953 lncRNA upstream 308626 10943064 ~ 10944756 (-) False XLOC_026150
TCONS_00052954 lncRNA upstream 308626 10943064 ~ 10994065 (-) False XLOC_026150
TCONS_00051050 mRNA downstream 10213 10535957 ~ 10582384 (-) False XLOC_026140
TCONS_00051052 mRNA downstream 10213 10574183 ~ 10582384 (-) True XLOC_026140
TCONS_00051049 mRNA downstream 167284 10407458 ~ 10425313 (-) True XLOC_026138
TCONS_00051048 mRNA downstream 280365 10310090 ~ 10312232 (-) False XLOC_026137
TCONS_00051040 mRNA downstream 853612 9737490 ~ 9738985 (-) True XLOC_026124
TCONS_00051058 mRNA upstream 17637 10652075 ~ 10677890 (-) False XLOC_026142
TCONS_00051059 mRNA upstream 26937 10661375 ~ 10677952 (-) True XLOC_026142
TCONS_00051060 mRNA upstream 68446 10702884 ~ 10706846 (-) True XLOC_026145
TCONS_00051061 mRNA upstream 94532 10728970 ~ 10751491 (-) False XLOC_026146
TCONS_00051062 mRNA upstream 94960 10729398 ~ 10739625 (-) True XLOC_026146
TCONS_00051051 other downstream 44120 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051047 other downstream 379377 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 405446 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051045 other downstream 406244 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051043 other downstream 678208 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051071 other upstream 724080 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051073 other upstream 762831 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051092 other upstream 2291164 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 2311206 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051114 other upstream 4253614 14888052 ~ 14888168 (-) True XLOC_026205

Expression Profile

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