RNA id: TU1991330


Basic Information

Item Value
RNA id TU1991330
length 203
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1738829
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41538492 ~ 41538694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactggaccaacattgtccttctcgcgagataaatataaatgctaaggtttttcatgcgagattgacatcatttacgttgtcataccagccagattaataagaataaattatatgttccttggagaacacagaatgatcaagctattgagtaacagaagatcagagaccattgacagccattttaccagtaggtatgataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991325 lncRNA upstream 3147 41527669 ~ 41535345 (+) True G1738824
TU1990727 lncRNA upstream 12673 41455556 ~ 41525819 (+) True G1738291
TU1990740 lncRNA upstream 57936 41473263 ~ 41480556 (+) True G1738303
TU1990724 lncRNA upstream 145839 41390347 ~ 41392653 (+) False G1738291
TU1990697 lncRNA upstream 187068 41350490 ~ 41351424 (+) True G1738265
TU1991332 lncRNA downstream 2199 41540893 ~ 41541142 (+) True G1738831
TU1991416 lncRNA downstream 181709 41720403 ~ 41720637 (+) True G1738892
TU1991417 lncRNA downstream 182986 41721680 ~ 41722008 (+) True G1738893
TU1991453 lncRNA downstream 230089 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 230807 41769501 ~ 41769847 (+) True G1738925
XM_021577811.2 mRNA upstream 272125 41257323 ~ 41266367 (+) True LOC110500434
XM_036957843.1 mRNA upstream 291359 41224772 ~ 41247133 (+) True LOC110500837
XM_021577806.2 mRNA upstream 322503 41203290 ~ 41215989 (+) False prkd4
XM_021577809.2 mRNA upstream 322503 41203875 ~ 41215989 (+) False prkd4
XM_021577808.2 mRNA upstream 322747 41203290 ~ 41215745 (+) False prkd4
LOC110500843 mRNA downstream 46114 41584808 ~ 41601466 (+) True LOC110500843
XM_036956508.1 mRNA downstream 70556 41609250 ~ 41615747 (+) True LOC110500443
XM_036957845.1 mRNA downstream 104313 41643007 ~ 41672302 (+) False LOC110500439
XM_036957846.1 mRNA downstream 104313 41643007 ~ 41672302 (+) False LOC110500439
XM_036957848.1 mRNA downstream 104313 41643007 ~ 41672302 (+) False LOC110500439
TU1990529 other upstream 509356 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 541172 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 984639 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1134807 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1475167 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 350117 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 356635 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 746362 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 815883 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 962655 42501349 ~ 42502357 (+) True G1739440

Expression Profile