RNA id: TCONS_00052952


Basic Information

Item Value
RNA id TCONS_00052952
length 547
lncRNA type sense_over
GC content 0.35
exon number 4
gene id XLOC_026143
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10684322 ~ 10711294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAACAGTGAATGGTGATCGTATGCTGGAAGATCTGCGATTCATTGTCTTCCCTTCTGAATGTGTCTTTGCCATATCTCTGCTGATCTCTGGATTATTTCCGTCTTGTATTGTGAAGTGTCTGCAGTTTTTTCAgAAAAGGGTGAAATCTAAAGGAACTAAAAAGCAAAACACAACAGGATCACAACTGACCAGGCTGAATGCTGAATATCAGGAGGAAAATCTGCTTGATTCAGGCAAAACACAAAAAGATCAGTGATGGAAGAATGGGATTTTTCCAGATGTCTTCTGCGCACTGCACAAGATCTCAAAACACACTTTTTCTGAAAAACTGCTTTAATACAATTTGAAttgtaaaaaatgaaatgaaatgaaaatgtttgtgtgatgaattaaaataatgaagctttgtaatattacattatttgttgGTGATATAGAGTACTTGTTTTCCTGTAGTGGAATTGCCAGGGTTGAAGAGATTGCGTtttatatattagttttatttgttcatttaaaatagAGATCCAACTTTGTTTCCGatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052438 lncRNA downstream 154426 10523450 ~ 10529896 (-) False XLOC_026139
TCONS_00052439 lncRNA downstream 154426 10529340 ~ 10529896 (-) True XLOC_026139
TCONS_00052951 lncRNA downstream 290494 10252159 ~ 10393828 (-) True XLOC_026136
TCONS_00052437 lncRNA downstream 372070 10310206 ~ 10312252 (-) True XLOC_026137
TCONS_00052950 lncRNA downstream 547181 10062188 ~ 10137141 (-) True XLOC_026132
TCONS_00052953 lncRNA upstream 231770 10943064 ~ 10944756 (-) False XLOC_026150
TCONS_00052954 lncRNA upstream 231770 10943064 ~ 10994065 (-) False XLOC_026150
TCONS_00052955 lncRNA upstream 231770 10943064 ~ 10994273 (-) False XLOC_026150
TCONS_00052956 lncRNA upstream 231770 10943064 ~ 10994316 (-) False XLOC_026150
TCONS_00052957 lncRNA upstream 231770 10943064 ~ 10994386 (-) False XLOC_026150
TCONS_00051059 mRNA downstream 6370 10661375 ~ 10677952 (-) True XLOC_026142
TCONS_00051058 mRNA downstream 6432 10652075 ~ 10677890 (-) False XLOC_026142
TCONS_00051054 mRNA downstream 49790 10592597 ~ 10634532 (-) False XLOC_026141
TCONS_00051057 mRNA downstream 49790 10604229 ~ 10634532 (-) True XLOC_026141
TCONS_00051053 mRNA downstream 49884 10592597 ~ 10634438 (-) False XLOC_026141
TCONS_00051061 mRNA upstream 17676 10728970 ~ 10751491 (-) False XLOC_026146
TCONS_00051062 mRNA upstream 18104 10729398 ~ 10739625 (-) True XLOC_026146
TCONS_00051063 mRNA upstream 31942 10743236 ~ 10749691 (-) True XLOC_026147
TCONS_00051064 mRNA upstream 51427 10762721 ~ 10779777 (-) True XLOC_026148
TCONS_00051065 mRNA upstream 202819 10914113 ~ 11008532 (-) True XLOC_026149
TCONS_00051051 other downstream 135845 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051047 other downstream 471102 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 497171 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051045 other downstream 497969 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051043 other downstream 769933 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051071 other upstream 647224 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051073 other upstream 685975 11397269 ~ 11401300 (-) True XLOC_026162
TCONS_00051092 other upstream 2214308 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 2234350 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051114 other upstream 4176758 14888052 ~ 14888168 (-) True XLOC_026205