RNA id: TU1992848


Basic Information

Item Value
RNA id TU1992848
length 223
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1740162
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42915508 ~ 42915730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtaaaggtggtctagagtttattTTCCTCtcgttgcacatgtgacatgctggtggaaggtcaaactgatttaagtttgcctgcattgaagtccccggccactagcagcgccgcttctggatgagcatttccttgtttgcttatggccttatagagttggttgagtgcggtctcagttccagcatcggtctgtggtggtaaataaacggctacgaataatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992847 lncRNA upstream 1118 42914189 ~ 42914390 (+) True G1740161
TU1992828 lncRNA upstream 32631 42882519 ~ 42882877 (+) True G1740142
TU1992825 lncRNA upstream 39872 42875415 ~ 42875636 (+) True G1740139
TU1992823 lncRNA upstream 44564 42870744 ~ 42870944 (+) True G1740137
TU1992822 lncRNA upstream 45676 42869624 ~ 42869832 (+) True G1740136
TU1992918 lncRNA downstream 65723 42981453 ~ 42981792 (+) True G1740206
TU1992921 lncRNA downstream 68821 42984551 ~ 42985006 (+) True G1740209
TU1992922 lncRNA downstream 69371 42985101 ~ 42985377 (+) True G1740210
TU1992923 lncRNA downstream 72035 42987765 ~ 42988281 (+) True G1740211
TU1992907 lncRNA downstream 242958 43158688 ~ 43161692 (+) False LOC110500494
XM_021577868.2 mRNA upstream 81414 42821715 ~ 42834094 (+) True LOC110500479
XM_021577865.2 mRNA upstream 114960 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA upstream 114960 42790651 ~ 42800548 (+) True LOC110500477
XM_036957893.1 mRNA upstream 225229 42676945 ~ 42690279 (+) False LOC110500846
XM_036957894.1 mRNA upstream 254413 42655417 ~ 42661095 (+) False c21h4orf48
XM_036957895.1 mRNA downstream 86956 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA downstream 86956 43002686 ~ 43034963 (+) False LOC110500480
XM_036957897.1 mRNA downstream 86956 43002686 ~ 43034963 (+) True LOC110500480
XM_021577872.2 mRNA downstream 126036 43041766 ~ 43055080 (+) True gmpr2
XM_021577873.2 mRNA downstream 142782 43058512 ~ 43062374 (+) False LOC110500484
TU1992021 other upstream 413151 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 560181 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 627008 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1017652 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1024141 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 339923 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 351484 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 351601 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 473459 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 531320 43447050 ~ 43451167 (+) False G1740398

Expression Profile