RNA id: TU1993101



Basic Information


Item Value
RNA id TU1993101
length 491
RNA type TUCP
GC content 0.54
exon number 2
gene id G1740366
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43389189 ~ 43390299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGTGACGTCCAGCTGTACAGCCTGCCTGGCCATGTCCACACTCTCCAGGACCCTCTTCCCCTGCTCATCAACGCCCGGTAGCTgcctcagcaccatggacagactGCGCAGAGACACCTTGTTTTttttCTGCTGCAGGGCTCCAGTGAAACAAGTCTTGGCGGTGGTCAGGTCTCCTTTCTTCCAGTACTGCTCCCCCAGGATATTCCAGCCCTCCACCAGCCCAGGTTCCAGCTTCACAGCCCTGGACAGGCACTCCTCGGCGGTGGTGCTAAACTCTGGTGCCACCCCCAGGCAGCGGCCCCGCAGCAGCAGGAACTCAGCGCTGTGCTTATACGACTctggagaagacagagagattatTCTGTAGTCAATTGAATTATTTTGTGTTTGAAGATGTAACCCCACATATTAGATATCAAATGGAGGCAAAGCTCAACTCAGTCAGCACTGTGCTTATGTAACCTCGTCCCCAGGCTCAATTGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1993104 lncRNA upstream 2957 43385227 ~ 43386232 (+) True G1740367
TU1993078 lncRNA upstream 17360 43344536 ~ 43371829 (+) True G1740345
TU1993073 lncRNA upstream 55496 43333476 ~ 43333693 (+) True G1740340
TU1993072 lncRNA upstream 56622 43332130 ~ 43332567 (+) True G1740339
TU1993070 lncRNA upstream 58847 43330070 ~ 43330342 (+) True G1740337
TU1993112 lncRNA downstream 13239 43403538 ~ 43404426 (+) True LOC118942788
TU1993138 lncRNA downstream 39984 43430283 ~ 43432161 (+) True G1740388
TU1993164 lncRNA downstream 72554 43462853 ~ 43463081 (+) True G1740411
TU1993161 lncRNA downstream 74531 43464830 ~ 43466342 (+) True G1740408
TU1993168 lncRNA downstream 85564 43475863 ~ 43476299 (+) True G1740415
XM_021577912.2 mRNA upstream 4111 43382881 ~ 43385078 (+) True LOC110500510
XM_036957910.1 mRNA upstream 34752 43346414 ~ 43354437 (+) True oxa1l
XM_036957911.1 mRNA upstream 43410 43335680 ~ 43345779 (+) False LOC110500504
XM_036957912.1 mRNA upstream 43410 43335682 ~ 43345779 (+) True LOC110500504
XR_005038608.1 mRNA upstream 43712 43335680 ~ 43345477 (+) False LOC110500504
XR_005038440.1 mRNA downstream 7255 43397554 ~ 43404747 (+) False LOC118942788
LOC110500847 mRNA downstream 15199 43405498 ~ 43409042 (+) True LOC110500847
XR_005038610.1 mRNA downstream 622554 44012853 ~ 44019901 (+) True LOC118942933
XM_021577920.2 mRNA downstream 649653 44039952 ~ 44049588 (+) False LOC110500517
XM_021577921.2 mRNA downstream 707638 44097937 ~ 44099926 (+) False pop7
TU1993038 other upstream 61451 43255653 ~ 43327738 (+) True G1740312
TU1993035 other upstream 121046 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other upstream 121046 43267331 ~ 43268143 (+) True LOC110500499
TU1992021 other upstream 886832 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 1033862 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1993150 other downstream 56751 43447050 ~ 43451167 (+) False G1740398
TU1993149 other downstream 60123 43450422 ~ 43451167 (+) True G1740398
TU1993165 other downstream 79519 43469818 ~ 43470325 (+) True G1740412
TU1993210 other downstream 134437 43524736 ~ 43526726 (+) True G1740453
TU1993553 other downstream 822487 44212786 ~ 44213230 (+) True G1740752

Expression Profile