RNA id: TU1993535


Basic Information

Item Value
RNA id TU1993535
length 2518
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1740738
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44175192 ~ 44181626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATGTCTTTAATGTTCCCCACATCAGAATCCCAGCACACAGTGTATCATAACTTCTAAAGTAAACAAATATCATCACCTTATTTATATAGTTTTACTTTCATTTTTTTGAATTATAATATGTTTTTAAAATCCATTATTAACATGTTTTCGTCATCTCAAGTCTTGGGTTTCGGAATTCTacaaagaaaataaaaacaagacAACAGGTGCAAATTTGACTATGCAGGCCCGAACTGACACCCAGCTCAGAATGTTTCCCAGGGTTATTTGTCATGTGCTTCAGTACAACTGGTCTCTCAGGTGCCTTGACCTTAACATAGACGAACCTTTCTCTGTTTTGAAGGTCAACCATGACATGTGGTCACGAGCAAGGCAGGAAATTCACCTACATGAAACATTGTTACGGTCTACCTCTTTAGTTCAGGACAGGTGTTTAACAGAGCATCACTCTGGCAAATCTATAAAACAGTGTTAGCTGCTTCATAACAACAGATGGTGTTAATCATTGAACACTTAACAAAATTGGTTTTGCACCAAAAAGTATGACTTTCTTTATGTGCGGGAGATAATACATTAAAATCCAATatggatttttttgggggggtcgtGTCAATCGTTTTAAAGTCCTACTAAACTAACACAATAGATATCAACTCCCTCTGCATTAGTCCTAACTAATGCTACAACAAAATGGAGTACACACCTATGCTTACACACCAAATGAGCTATCCTAACACATACTCTCACATGTACACACTCACACTTCCTGGTCTGTACCTATGTACATGCCTTGTCATGCAGTTCAACCATCTGCCCACTAAGCAGCTCAATTCCCACCTCACCGTTCCACTTGGAAGGCAAGCTTAGCGGTACCGATAGCTTATGATGAGGTCACTGTATACAGGTAGCACAACCTACATGAACAGGACACATATTGTACGTAACACAGTGTATTCAGGGGGACATGTGTCCCACCCGCAGTACGTGATTCCCGATAAGGCTAAGacgtagcctggtcccagatctgtttgtgccgtctTGTCAACTCCTGGTCGCGACAATGAccgtaggagttggcaagacggcACAAACCGATCTGGGAATAGGCTAGATCAGAGGCAACTTAGGTTACAAAAAGCCATCGTTTCTCGGTCTCCCTGTGGTTCCGGGGCTACACAACGGTGGGAGAGTCAACAGGGTTGGAAATATACACATTCCAAAAGCCACAAGGATGTTTTTAAAGGTGCATTCATTTGATTAAATTTTTTGCTTCTTGGCCATGTTTGTCGTTGCCACATGGGTGGTGGAAGTGACCGATTCCACCTTTAAGGTGTGCTGTATCATCATCCAGTATGGCTGGTGTGGTACACAGCTAATACAGGCCTGCAGTTATGCAGGGCCCATTTTGAACGTGGGAGAGACCCTATAACCAACAGCAGAGAATGAGAATGGGTCAGTATCCCTGCTACGGTGTTCGCTTAGTGCTTACACAGGTTGAGTAGTCAAGATGCTACGTAGACAACACATGATGACTTTGTTCTGAATGTCCATTGTCTATCCACTTCTGAACAACTTTGTTAGTGACATGCACGGAAAGAGCTGACAGAACGAGAATCCCACTTTCCTGAATCTCTCGGAAAAGTTCCGTGGCGAATACATTTAAATGGCGTACGGTTAACATACAATACTAGCTGGAGACCCCTTTTCAACTTGCACCTGTTGTCTCTGTTGTCGTCACAAAGTCATTTCATTCATTCActcgaaaaaaacaaaacaagaaacgtaatATTTACAAATATTTTTGACTGTTTGTTCTTACACttaaaaatgtacagttttgctCCTCTTTTTTTGACGTCTCTCTCTGTCGCAAAACGCTGAATTCCTCCACGTTCAGAATGTTCAGAGGAACAGTAGGTTGTTATGGCGATTGTGTCTCCATGGCGCCCTCTAGTGTGTAAGCGTATAAAATAGACAAGGAAAAGAACAGGAAACAAAGGAAATCGCATCTGTCACTCTTCGATTGGTTGAAgttttgttgtgttgtatttGTAGTAGTACTAGTTTCCTCTGCGACTCTCCCGTTGCCCTCTTATTCACAGGATAAAAAAGTTCAGGATCTAATGGCACAAAGACTTGATAGGACAGATGAATCTGATCATTCCCACACCTGAAATAAGATGTCGGTGCCCTAGTCTGTCCACTGTCCCGGTCACATCTCACACCCTTTCCCCTTTGTTTAAGGCTGTGATGATGACTTGGAGGCTTTGGGGCTCTCTCCCAGGTTTCATATTCTAGTCCAATAGCACATTTTATAGTAAATCCATCTCTGTAGCGGAGAGAAAAGTTCCAGCATATAAGTCCACTGACTCCCTCTGATTCCACATAAACAACCCCAGTCTGGTCCTTGTTACAGTATATTGTACAGCGGATCATCTCCTGTGTTTCCCcaccacacactgtctctctcagttGGCCAACACAGAGTATCTGACAACACCAACCTGtgttctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993533 lncRNA upstream 1941 44173009 ~ 44173251 (+) True G1740736
TU1993532 lncRNA upstream 3927 44170831 ~ 44171265 (+) True G1740735
TU1993528 lncRNA upstream 15125 44159830 ~ 44160067 (+) True G1740731
TU1993457 lncRNA upstream 124427 44047717 ~ 44050765 (+) True LOC110500517
TU1993468 lncRNA upstream 128102 44046776 ~ 44047090 (+) False LOC110500517
TU1993537 lncRNA downstream 106 44177815 ~ 44181626 (+) True G1740738
TU1993540 lncRNA downstream 12270 44189979 ~ 44190321 (+) True G1740739
TU1993541 lncRNA downstream 13738 44191447 ~ 44191706 (+) True G1740740
TU1993542 lncRNA downstream 14207 44191916 ~ 44192266 (+) True G1740741
TU1993543 lncRNA downstream 15683 44193392 ~ 44193724 (+) True G1740742
XM_021577926.2 mRNA upstream 21123 44126082 ~ 44154069 (+) False LOC110500520
XM_021577925.2 mRNA upstream 21123 44149056 ~ 44154069 (+) True LOC110500520
XM_021577931.2 mRNA upstream 47139 44126674 ~ 44128053 (+) True ufsp1
XM_021577921.2 mRNA upstream 75266 44097937 ~ 44099926 (+) False pop7
XM_021577935.2 mRNA downstream 268477 44446186 ~ 44451532 (+) False LOC110500528
XM_036957940.1 mRNA downstream 283629 44461338 ~ 44480565 (+) False LOC110500529
XM_021577936.2 mRNA downstream 283630 44461339 ~ 44480565 (+) False LOC110500529
XR_005038612.1 mRNA downstream 360235 44537944 ~ 44556711 (+) False LOC110500530
XR_005038613.1 mRNA downstream 376486 44554195 ~ 44556703 (+) True LOC110500530
TU1993210 other upstream 648466 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 704867 43469818 ~ 43470325 (+) True G1740412
TU1993150 other upstream 724025 43447050 ~ 43451167 (+) False G1740398
TU1993149 other upstream 724025 43450422 ~ 43451167 (+) True G1740398
TU1993101 other upstream 784893 43389189 ~ 43390299 (+) True G1740366
TU1993553 other downstream 35077 44212786 ~ 44213230 (+) True G1740752
TU1994546 other downstream 268851 44446560 ~ 44451532 (+) True LOC110500528
TU1994553 other downstream 283673 44461382 ~ 44472564 (+) False LOC110500529
TU1995329 other downstream 1266818 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 1307563 45485272 ~ 45493952 (+) True LOC110500870

Expression Profile