RNA id: TU1994490


Basic Information

Item Value
RNA id TU1994490
length 203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1741587
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44405226 ~ 44405428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtaacgagttcaaacaggtgcagttaatataggtaatgagtggagaacaggagggcttcttaaagaaaaactaacaggtctgtgagagccgtaattcttactggttggtaggtgatcataCTTATtgtatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994484 lncRNA upstream 3630 44401359 ~ 44401596 (+) True G1741581
TU1993651 lncRNA upstream 14791 44389262 ~ 44390435 (+) True G1740847
TU1993654 lncRNA upstream 15088 44389172 ~ 44390138 (+) False G1740847
TU1993655 lncRNA upstream 15210 44389172 ~ 44390016 (+) False G1740847
TU1993648 lncRNA upstream 18321 44386692 ~ 44386905 (+) True G1740844
TU1994556 lncRNA downstream 53178 44458606 ~ 44458893 (+) True G1741653
TU1994569 lncRNA downstream 69975 44475403 ~ 44475629 (+) True G1741666
TU1994552 lncRNA downstream 73392 44478820 ~ 44480565 (+) True LOC110500529
TU1994573 lncRNA downstream 83102 44488530 ~ 44488758 (+) True G1741670
TU1994619 lncRNA downstream 268579 44674007 ~ 44675297 (+) False G1741712
XM_021577926.2 mRNA upstream 251157 44126082 ~ 44154069 (+) False LOC110500520
XM_021577925.2 mRNA upstream 251157 44149056 ~ 44154069 (+) True LOC110500520
XM_021577931.2 mRNA upstream 277173 44126674 ~ 44128053 (+) True ufsp1
XM_021577921.2 mRNA upstream 305300 44097937 ~ 44099926 (+) False pop7
XM_021577935.2 mRNA downstream 40758 44446186 ~ 44451532 (+) False LOC110500528
XM_036957940.1 mRNA downstream 55910 44461338 ~ 44480565 (+) False LOC110500529
XM_021577936.2 mRNA downstream 55911 44461339 ~ 44480565 (+) False LOC110500529
XR_005038612.1 mRNA downstream 132516 44537944 ~ 44556711 (+) False LOC110500530
XR_005038613.1 mRNA downstream 148767 44554195 ~ 44556703 (+) True LOC110500530
TU1993553 other upstream 191996 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 878500 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 934901 43469818 ~ 43470325 (+) True G1740412
TU1993150 other upstream 954059 43447050 ~ 43451167 (+) False G1740398
TU1994546 other downstream 41132 44446560 ~ 44451532 (+) True LOC110500528
TU1994553 other downstream 55954 44461382 ~ 44472564 (+) False LOC110500529
TU1995329 other downstream 1039099 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 1079844 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 1143689 45549117 ~ 45555589 (+) True si:dkey-38p12.3

Expression Profile