RNA id: TU1994573


Basic Information

Item Value
RNA id TU1994573
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1741670
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44488530 ~ 44488758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caattccgagttggatgattgttcaaaacgtattttcctagTCGGAGCTTGTTTATTcccgacttcccagttgtcttgaactcactaaagtcaaGTTTTTGTAGTTCTGTGTAACAGTTATTTGGAGCActgcacaaatcatgcttcattgacagcatggccaatgttgaatgtttataattttaaacttgAAAAAGAGCTCCTTAATCCTAGATTTGgtaccacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994552 lncRNA upstream 7965 44478820 ~ 44480565 (+) True LOC110500529
TU1994569 lncRNA upstream 12901 44475403 ~ 44475629 (+) True G1741666
TU1994556 lncRNA upstream 29637 44458606 ~ 44458893 (+) True G1741653
TU1994490 lncRNA upstream 83102 44405226 ~ 44405428 (+) True G1741587
TU1994484 lncRNA upstream 86934 44401359 ~ 44401596 (+) True G1741581
TU1994619 lncRNA downstream 185249 44674007 ~ 44675297 (+) False G1741712
TU1994620 lncRNA downstream 185249 44674007 ~ 44675297 (+) True G1741712
TU1994889 lncRNA downstream 230781 44719539 ~ 44719756 (+) True G1741965
TU1994917 lncRNA downstream 270721 44759479 ~ 44759698 (+) True G1741989
TU1994920 lncRNA downstream 274579 44763337 ~ 44763631 (+) True G1741992
XM_036957940.1 mRNA upstream 7965 44461338 ~ 44480565 (+) False LOC110500529
XM_021577936.2 mRNA upstream 7965 44461339 ~ 44480565 (+) False LOC110500529
XM_021577935.2 mRNA upstream 36998 44446186 ~ 44451532 (+) False LOC110500528
XM_021577926.2 mRNA upstream 334461 44126082 ~ 44154069 (+) False LOC110500520
XM_021577925.2 mRNA upstream 334461 44149056 ~ 44154069 (+) True LOC110500520
XR_005038612.1 mRNA downstream 49186 44537944 ~ 44556711 (+) False LOC110500530
XR_005038613.1 mRNA downstream 65437 44554195 ~ 44556703 (+) True LOC110500530
XM_036956514.1 mRNA downstream 112105 44600863 ~ 44667561 (+) True LOC110500854
XM_036957941.1 mRNA downstream 190907 44679665 ~ 44703721 (+) False chrnb1
XM_021577937.2 mRNA downstream 191027 44679785 ~ 44703720 (+) True chrnb1
TU1994553 other upstream 15966 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 36998 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 275300 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 961804 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1018205 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 955769 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 996514 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 1060359 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 1150538 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 1218384 45707142 ~ 45709950 (+) True G1743077

Expression Profile