RNA id: TU1994917


Basic Information

Item Value
RNA id TU1994917
length 220
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1741989
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44759479 ~ 44759698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatctgtggttaaaaagatgACAAGAAAGGTCCTAAAAAATGCTTCTCTTTGACGTGACAGGGTAGGATTAAAATGAAGAGAAACGgtgattttcaaaacctgcaacGAGTTTCTAGCCAGAGAGAGGGTATTTTCTTGGTCCCTGCATCACTGCTAATTTCATAGTGcttgaaaatcactgtttttaaaatgtaacaTGACGATGTCATTGTGTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994889 lncRNA upstream 39723 44719539 ~ 44719756 (+) True G1741965
TU1994619 lncRNA upstream 84182 44674007 ~ 44675297 (+) False G1741712
TU1994620 lncRNA upstream 84182 44674007 ~ 44675297 (+) True G1741712
TU1994573 lncRNA upstream 270721 44488530 ~ 44488758 (+) True G1741670
TU1994552 lncRNA upstream 278914 44478820 ~ 44480565 (+) True LOC110500529
TU1994920 lncRNA downstream 3639 44763337 ~ 44763631 (+) True G1741992
TU1994922 lncRNA downstream 5990 44765688 ~ 44765905 (+) True G1741994
TU1994929 lncRNA downstream 29972 44789670 ~ 44793859 (+) True LOC118942934
TU1994940 lncRNA downstream 40853 44800551 ~ 44800959 (+) True G1742012
TU1994901 lncRNA downstream 58664 44818362 ~ 44824568 (+) True G1741973
XM_021577938.2 mRNA upstream 12849 44727200 ~ 44746630 (+) True LOC110500532
XM_036957941.1 mRNA upstream 55758 44679665 ~ 44703721 (+) False chrnb1
XM_021577937.2 mRNA upstream 55759 44679785 ~ 44703720 (+) True chrnb1
XM_036956514.1 mRNA upstream 91918 44600863 ~ 44667561 (+) True LOC110500854
XR_005038612.1 mRNA upstream 202768 44537944 ~ 44556711 (+) False LOC110500530
XM_021577939.2 mRNA downstream 22521 44782219 ~ 44788930 (+) True LOC110500535
XR_005038614.1 mRNA downstream 30901 44790599 ~ 44796290 (+) False LOC118942934
XM_021577945.2 mRNA downstream 45100 44804798 ~ 44807754 (+) True LOC110500538
XM_036956495.1 mRNA downstream 101513 44861211 ~ 44862751 (+) True ponzr6
XM_036957948.1 mRNA downstream 103497 44863195 ~ 44866199 (+) False LOC110500539
TU1994553 other upstream 286915 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 307947 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 546249 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1232753 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1289154 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 684829 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 725574 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 789419 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 879598 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 947444 45707142 ~ 45709950 (+) True G1743077

Expression Profile