RNA id: TCONS_00051073


Basic Information

Item Value
RNA id TCONS_00051073
length 2146
RNA type processed_transcript
GC content 0.46
exon number 11
gene id XLOC_026162
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11397269 ~ 11401300 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCGATGCCACCAAGAGAACACCCTTGTGCTATTTTAGGATGTAAGGCTCAGCACAAGGGCCTTCACCGTCTTCCTGCAAATGAGCAACAGAGGCTTAAGTGGCTGAGTTTTATCTTTGAAGACAAGGTGCCTGAAAATGTACCAAAACTGTTGTATGTTTGCGCTAACCACTTTAGCGTAGACTGCCTCGAGAACGCGGGACAATACAACTGCGGATTCGCgagtaaattgtttttgaaaactggaTCAGTTCCTACAACACGTGATCCTGCCTCACTTCAAGCCACGACGTCGACAAAGAGCAACAAGGTGGATGTTTGTTGCCAGACAGAACCATTTCACACATCTTTACACAGTGTTGGTACCCAGTTGTCTTTTAGGACGCTTCAGGCTAAACGCAGGAGTACAAGTGTCCAGACAACAGTATCCAGTTTTGAACTGACTGTACCATCAGCGTCCTCTACTGCGTTTATGACTTCGACACCCCTCAAACCTTCACTAAAAAGACCTCGTCTggagctggaggaggaggaggaggaggaggaggaggaagaagaagaagccgAAGAGACTTTGACAGAGTCAAAAATTATAGCCCAAGACTCGGATGTGAGATTTGACCCTGCAGAGGAATGCACATCTGCAACTGAACCAACAGACTTGTCaatccAAGAATGCCCAGTTCATAACATTGCCAAGTTCATTGTCTATGAAACATGCCTCATGGAGCTCTTCAGTGACTGCCCAGTGTGTCAGAGGAGATGTGATGTAAAGTCACAAAGGCTTGGGACATTTCTGAGCGTACAGCAAGTCTGCCCACACTGCGAGTTTGTAAGAAAATGGAACAGTCAGCCAATTATTGGTAGTACTCCAGCTGGCAACCTGCATCTTTCTGCTGCTGTCTACTTGAGTGGTGCATAATTTTTTGTAGTTGAAAAGGTATTTGCTGCCATGaaactacacatttttaaatatgattcaTTTCGTCGTCATGCAAGACTTTGCATTGAACCTgctattgtccacaagtggagaAATTGGCAGAGTGAAATGCTAGAACAGCTCAGTCGAAGAGAGAATATGATTGTTGGAGGAGATAAGAGGGCTGACTCCCAGGTCACTCGGCCAAGTATGGGAGTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGagTAATGAGGTGGGCGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACCGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAAACTGGACCAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTGCGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCATAAACCATGTACATGAAGACCCCAATTTTCCGGCTTATCTGCATCCGCAACGGATAAGCAGAGACGAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCCTACTGCGGTTTGCACCCAAAAATGTGGTATTCCCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTGCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAAAAGTGAAGACGCAGCAAACTTTCgGTTATGTAGAAGAGCTGCTGGACCTCATCTTCAACCAAGTGTTTGTGGACCCATCACCCTATGTTGATGAAGTGTTGGGAATTCACATACCACCTGCTCTATCATCAGCCTGCGATCGACCTGAGATGGAGGAGGCTATCTCCAGCAGGGTGACCCGCTTCAATCAATAGCTATCCTAAAACCCACATAGCTGCCCTGCTCTTCAGGAAACTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160119

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052443 lncRNA downstream 93341 11298792 ~ 11303928 (-) True XLOC_026158
TCONS_00052442 lncRNA downstream 143402 11253472 ~ 11253867 (-) True XLOC_026157
TCONS_00052961 lncRNA downstream 348078 11048579 ~ 11049191 (-) True XLOC_026153
TCONS_00052960 lncRNA downstream 348086 11018469 ~ 11049183 (-) False XLOC_026153
TCONS_00052959 lncRNA downstream 402883 10992990 ~ 10994386 (-) True XLOC_026150
TCONS_00052962 lncRNA upstream 90143 11491443 ~ 11510052 (-) True XLOC_026163
TCONS_00052963 lncRNA upstream 175354 11576654 ~ 11580720 (-) True XLOC_026164
TCONS_00052444 lncRNA upstream 302609 11703909 ~ 11717849 (-) True XLOC_026166
TCONS_00052445 lncRNA upstream 709860 12111160 ~ 12112099 (-) False XLOC_026171
TCONS_00052964 lncRNA upstream 710480 12111780 ~ 12113782 (-) True XLOC_026171
TCONS_00051072 mRNA downstream 23834 11371786 ~ 11373435 (-) True XLOC_026161
TCONS_00051070 mRNA downstream 74537 11306799 ~ 11322732 (-) True XLOC_026159
TCONS_00051069 mRNA downstream 193580 11202622 ~ 11203689 (-) True XLOC_026156
TCONS_00051068 mRNA downstream 308207 11079404 ~ 11089062 (-) True XLOC_026155
TCONS_00051067 mRNA downstream 356694 11032192 ~ 11040575 (-) True XLOC_026154
TCONS_00051074 mRNA upstream 183998 11585298 ~ 11624694 (-) True XLOC_026165
TCONS_00051075 mRNA upstream 378389 11779689 ~ 11828206 (-) True XLOC_026167
TCONS_00051076 mRNA upstream 466401 11867701 ~ 11878490 (-) False XLOC_026168
TCONS_00051077 mRNA upstream 466403 11867703 ~ 11922713 (-) True XLOC_026168
TCONS_00051078 mRNA upstream 557292 11958592 ~ 11969820 (-) False XLOC_026169
TCONS_00051071 other downstream 34886 11358518 ~ 11362383 (-) True XLOC_026160
TCONS_00051051 other downstream 848792 10536474 ~ 10548477 (-) False XLOC_026140
TCONS_00051047 other downstream 1184049 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051046 other downstream 1210118 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051045 other downstream 1210916 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051092 other upstream 1524302 12925602 ~ 12932891 (-) False XLOC_026180
TCONS_00051093 other upstream 1544344 12945644 ~ 12970428 (-) True XLOC_026180
TCONS_00051114 other upstream 3486752 14888052 ~ 14888168 (-) True XLOC_026205
TCONS_00051145 other upstream 4234646 15635946 ~ 15638112 (-) False XLOC_026222
TCONS_00051149 other upstream 4254291 15655591 ~ 15659607 (-) True XLOC_026223

Expression Profile

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