RNA id: TU1996143



Basic Information


Item Value
RNA id TU1996143
length 211
lncRNA type antisense_over
GC content 0.59
exon number 1
gene id G1743095
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45721996 ~ 45722206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCTCTCGGACCATGTATCGGGCCACTTTGAAGGAGCTCAGGTATTCGTTCATGTTCTGCATGTCCGTGTCATCCGTAGCGTCCTGGCTCCGGTCCAGCAACCTCTCGATGGCCGAGCTGTCGTAGTGGATCACACTGCCCTCATCGTCCCTGTTGTCTCCCGCTGGACACcgtaggggagagagggtggacatACGTGGTGGTGAGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1996140 lncRNA upstream 1153 45720512 ~ 45720843 (+) True G1743093
TU1996139 lncRNA upstream 1560 45719746 ~ 45720436 (+) True G1743092
TU1996138 lncRNA upstream 3254 45718387 ~ 45718742 (+) True G1743091
TU1996137 lncRNA upstream 3810 45717973 ~ 45718186 (+) True G1743090
TU1996136 lncRNA upstream 5852 45715911 ~ 45716144 (+) True G1743089
TU1996142 lncRNA downstream 861 45723067 ~ 45723371 (+) False G1743094
TU1996141 lncRNA downstream 946 45723152 ~ 45723371 (+) True G1743094
TU1996144 lncRNA downstream 2466 45724672 ~ 45725037 (+) True G1743096
TU1996146 lncRNA downstream 5270 45727476 ~ 45727961 (+) True G1743098
TU1996147 lncRNA downstream 6294 45728500 ~ 45728760 (+) True G1743099
XM_021577986.2 mRNA upstream 19334 45688450 ~ 45702662 (+) True LOC110500573
XM_021577985.2 mRNA upstream 35947 45677661 ~ 45686049 (+) True LOC110500572
XM_021577982.2 mRNA upstream 73747 45642861 ~ 45648249 (+) True si:dkey-19b23.7
XM_036957971.1 mRNA upstream 156254 45544516 ~ 45565742 (+) False si:dkey-38p12.3
XM_036957968.1 mRNA upstream 204763 45485247 ~ 45517233 (+) False LOC110500870
XM_021577990.2 mRNA downstream 22404 45744610 ~ 45755368 (+) False LOC110500577
XM_021577988.2 mRNA downstream 22411 45744617 ~ 45755368 (+) False LOC110500577
XM_021577989.2 mRNA downstream 22422 45744628 ~ 45755368 (+) False LOC110500577
XM_021577991.2 mRNA downstream 22422 45744628 ~ 45755368 (+) True LOC110500577
XM_021577999.2 mRNA downstream 125980 45848186 ~ 45850007 (+) True cnpy4
TU1996124 other upstream 12046 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 82254 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 166407 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 228044 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 273309 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 1441698 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2372561 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2602894 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 3255120 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3723633 49445839 ~ 49446626 (+) True G1747814

Expression Profile